Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0685 ATGGAGGAGAGGAAGTTCGTATGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAAGACTCATATGAATACTGAAAGTTATTCATCGTCTAAATCCAAGGGAGGTAGAACCAATGCGGATGATTGTGTTTTCAAGTTCGATGGTGGAAGTAAGAGGAAGAGAGATTTTGGGTCTGAAGAAGAAGCTGCTTCTGGAAACCCCATTTATTATGGTCTTCGAGAGAATCCCAAGAAAACAACGAGGTTCGTACATTCTTCCAACGTTGTTGCACAACAAGAGAGGTTCTGCAAAGACTGTGGGAAAAGATTTCTGTCTCTGAAAGCTCTCTGCGGCCATATGGCTTGTCATTCGGAGAAAGAGAAAGGAATGATGATGATGGCGAACAAATTTGAGAACAATTCTGGGTTTATTAGCATGAAGCAGCAGAAACTGGTGGTGGATAGCCAATCGGACACTGACACATCTGCTCCGAATCATCCTAGGACATCCAGAAGAATGAGGTTCAAGACCGTGAATACTGATAATAAAATCGACCCCCCTTGTCTTGTTTCTATGGCGAATGGTTCTTCCTCTGTGTCTGAGGTGGAGCAGGAACAAGAAGAGATCGCTAGGTGTTTGATGTTATTGTCCAAAGACTCTAACCATAGGGGTCGTTTTGTTTTGCCCACTGAATCTTCAGACAACAATTCTGTCGTGGTAGAGACAAAATCACCGTCTGTGGACACGATTATTACTCTCAACAATGGTAAAAAAGGCTCTGTGTCTAATGGTTTTGAGATCGTGAAGGAGAAGAAGAAGAAGGTGGTGCAGTATAATCAAAGCATGAAGTTGAAGTCTACTGAGATTGTCGATTCTGATAATTCAGATTCTGGGTTCAGAAATGGTCCCAAAAAGTTTGATTTTTCAATTGATGGGTATCATAGGAATGGGGATTTCAAGACACCAAAAGTGGAAATCAGGTCTGGGTGTGAGTTTGATCAGAACTATGATGCTGAATTGAGGAAGAAGATGCTGATCAAGAACAGAGGAAGAACCAGAAGCACTGAACCCAGAAAGCTAATTTTGGAGGATTTGGACTACAATACAACAAACGGTTCTGCAAGGGAAGAAGAGTTCATCAATTGGAGAAAGAGACCCAGATATGATTCTCTTTGCCAAAACAATTCAGTTGGCGTTTCTTGCAAAAGGACACAAAATGGTTTTCACAATGAGGGGTCATTGAAGTCAGAGAGTTTAAACAGTAAAAAAATTATAAATAATGGCTCTCAGGATTCAGCAGACGAGAGTGATGAAAGCAGCACAGACACTGATGCTTATACTGCTCCGAGATCTCATAGCAGCAAGGTCATCAATGGAAACAAGGTCACCAAGTTCAAGAAGAAATTGAAGTCAAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAAAAAGTTTAAGTCAGGCCAAGCATTAGGAGGTCACAAAAGGTCTCATTCTGTTGGAGGTTCTGAAGAGAACACAGTGGTGATCAAACAAGGCCCTCCTCTGGTTCCATGCTTGGTTGATCTCAATCTTCCTGCTCCTGTTGATGGTTAG 1599 0.4209 MEERKFVCKYCNKKYPCGKSLGGHIKTHMNTESYSSSKSKGGRTNADDCVFKFDGGSKRKRDFGSEEEAASGNPIYYGLRENPKKTTRFVHSSNVVAQQERFCKDCGKRFLSLKALCGHMACHSEKEKGMMMMANKFENNSGFISMKQQKLVVDSQSDTDTSAPNHPRTSRRMRFKTVNTDNKIDPPCLVSMANGSSSVSEVEQEQEEIARCLMLLSKDSNHRGRFVLPTESSDNNSVVVETKSPSVDTIITLNNGKKGSVSNGFEIVKEKKKKVVQYNQSMKLKSTEIVDSDNSDSGFRNGPKKFDFSIDGYHRNGDFKTPKVEIRSGCEFDQNYDAELRKKMLIKNRGRTRSTEPRKLILEDLDYNTTNGSAREEEFINWRKRPRYDSLCQNNSVGVSCKRTQNGFHNEGSLKSESLNSKKIINNGSQDSADESDESSTDTDAYTAPRSHSSKVINGNKVTKFKKKLKSKKSRDHECPICYKKFKSGQALGGHKRSHSVGGSEENTVVIKQGPPLVPCLVDLNLPAPVDG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0685 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Lele56g0685 532 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 531 - -
Lele56g0685 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lele56g0685 532 Pfam C2H2-type zinc finger 103 125 - -
Lele56g0685 532 Pfam C2H2-type zinc finger 6 29 - -
Lele56g0685 532 Pfam C2H2-type zinc finger 477 499 - -
Lele56g0685 532 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele56g0685 532 MobiDBLite consensus disorder prediction 424 453 - -
Lele56g0685 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 477 500 IPR013087 -
Lele56g0685 532 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Lele56g0685 532 ProSitePatterns Zinc finger C2H2 type domain signature. 479 499 IPR013087 -
Lele56g0685 532 SUPERFAMILY beta-beta-alpha zinc fingers 2 34 IPR036236 -
Lele56g0685 532 SUPERFAMILY beta-beta-alpha zinc fingers 102 499 IPR036236 -
Lele56g0685 532 SMART c2h2final6 101 123 IPR013087 -
Lele56g0685 532 SMART c2h2final6 477 499 IPR013087 -
Lele56g0685 532 SMART c2h2final6 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0685 Lele-ChrLele56 5124789 5126387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0685 1 531 C2H2 Transcription Factor Family AT1G26610 36.577 1.64e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele56g0685 zf-C2H2_6 2.7e-10 CL0361