Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0682 ATGCCTCGTCGTCTTCCGTTCCTTTCTGGATTACTGCGTTTTGTCCTGTGCAAAATGTTTGGGCTTCGAAGAACGCCTCCCAAGGTTGCTACACAGGACCCAGTTCGCCCAAGATCTCGAGCTTCTCCCAGTTATAACCCTTTTGATTCAGATACAGAACCAGTTAATAAAGCAACCCAAAAGCCAGAAAGACGAACTGCGTCAGAATCTGCCCTCAAAGTACCTAATTCTAAAAGAAACCCTTTTGATGATGATGATGAAGAAGATGATTGGGGAAGAGGAGCTTCCTCAACTTCATTATCATCGCACTCCTCATCTTCTGCAAAGGACAGATACAAAAGTAGGTTTGGTAACCATGGAGGACTAGAGAATCAGAGTTTTGAGGAGTTGGAGAATTATGCTGTGGAAAAGGCAGAGGAGACAACAAAAGGCATGAGAAATTGCATCAAGATAGCAGGGGACATAAGAGAAGAAGCCACAAAGACACTTGAGATGTTGCACCAACAGGGTGAGCAAATAACAAGGACTCATGATATGGTAGTTGATACGGAGAAGGATTTAACTAAGGGTGAGAAACTATTGAACAGCCTTGGGGGGATGTTCTCTAAGTCATGGAAGCCGAAGAAGACTAGAAACATTCAAGGCCCTGTCATTATAACGCCAGATAATTTATCCAAAAGAAGTGAGGAGAATACGGATGAGAGGGAAAGGCTAGGCTTAGCTGCTCTGTATAAAGGAAAATCATCTTCAAAGACACTTCCTGCTGATGCAACAAATGCATATCAGAAAGTTGATGTATGTGTTTATGAGGTTGAGAAGGCAAAACAAGATGAAGCACTTTCCGATCTGAGCAATATTTTGGTTGATTTGAAGAGTATGGCAGTTGACATGGGAACTGAAATAGACAGGCAAAATAAAGCTATGGATCATCTCAATTTAGATGTGGATGAAATGAACTCCCGAGTTAAAGGAGCTAACCAGCGTGCAAGAAAATTAATAGGCTGA 1005 0.4209 MPRRLPFLSGLLRFVLCKMFGLRRTPPKVATQDPVRPRSRASPSYNPFDSDTEPVNKATQKPERRTASESALKVPNSKRNPFDDDDEEDDWGRGASSTSLSSHSSSSAKDRYKSRFGNHGGLENQSFEELENYAVEKAEETTKGMRNCIKIAGDIREEATKTLEMLHQQGEQITRTHDMVVDTEKDLTKGEKLLNSLGGMFSKSWKPKKTRNIQGPVIITPDNLSKRSEENTDERERLGLAALYKGKSSSKTLPADATNAYQKVDVCVYEVEKAKQDEALSDLSNILVDLKSMAVDMGTEIDRQNKAMDHLNLDVDEMNSRVKGANQRARKLIG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0682 334 SUPERFAMILY SNARE fusion complex 269 333 - -
Lele56g0682 334 FunFam SNAP25 homologous protein SNAP33 121 198 - -
Lele56g0682 334 Gene3D - 121 199 - -
Lele56g0682 334 SMART tSNARE_6 130 197 IPR000727 -
Lele56g0682 334 SMART tSNARE_6 265 332 IPR000727 -
Lele56g0682 334 CDD SNARE_SNAP25N_23N_29N_SEC9N 132 196 IPR044766 GO:0005484|GO:0031201
Lele56g0682 334 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 80 333 - -
Lele56g0682 334 Coils Coil 301 328 - -
Lele56g0682 334 Gene3D - 269 334 - -
Lele56g0682 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 270 332 IPR000727 -
Lele56g0682 334 MobiDBLite consensus disorder prediction 37 55 - -
Lele56g0682 334 FunFam SNAP25 homologous protein SNAP33 267 334 - -
Lele56g0682 334 CDD SNARE_Qc 273 331 - -
Lele56g0682 334 SUPERFAMILY SNARE fusion complex 123 198 - -
Lele56g0682 334 MobiDBLite consensus disorder prediction 26 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0682 Lele-ChrLele56 5101490 5103792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0682 269 333 SNARE and Associated Proteins AT3G09740 40.000 4.87e-06 45.4