Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0642 ATGGCTTCTGAATCCGATGTTTCTCAGAATACGTCCCTCTTTGAAAGCTTGTTCAGATTCCGGGAGCTTTCTGTTTTCTTACCCTTCGTTTTAGGCTTCTCCACCGATTCTTCCAGACAAGACAGTCAAGACCCAGATCAGGAAACCACAAATTCAGAAAATAATAGTAATAACTATGGCGAAAGAGTCATCTTGGTCAATCCCTTTACGCAAGGCACGGCGGTGATTGACGGTACTTCGAGCCTCGACACTCTGTTCCACGAAATGGGTATAAAAAAGGGGCAACAGTCGGCGTCGAAGGAATCTATAGACGCGATGCCGAGTGTGGAAATCGAAGAAGGAGGCGGCGGCGAGTGTGTGATTTGTTTGGAGGAATGGGAGGTTGGTGGGGTGGCGAAAGAGATGCCTTGTGAGCACAAGTTTCATAAGAATTGTATAGAGAAATGGTTGGGAATTCGTGGGTCTTGCCCTGTTTGTAGATACCAGATGCCTGTGGCTGAGAAAGAAGTGGGAAAGAGAGATGAAGAAGAACAAGAAGCAGTAGAAGGAGGAGAGAGAATGAGGGTTGGCAGAGAAATTTGGGTGAGCTTCTCCTTTAGAAGTCAGAATACGAACCAAGCTCCTGATAATTCCAGTGATCCTTCATCAAGTCCAAGAGCTGATTCTGAGGTAGACAATTAG 681 0.4611 MASESDVSQNTSLFESLFRFRELSVFLPFVLGFSTDSSRQDSQDPDQETTNSENNSNNYGERVILVNPFTQGTAVIDGTSSLDTLFHEMGIKKGQQSASKESIDAMPSVEIEEGGGGECVICLEEWEVGGVAKEMPCEHKFHKNCIEKWLGIRGSCPVCRYQMPVAEKEVGKRDEEEQEAVEGGERMRVGREIWVSFSFRSQNTNQAPDNSSDPSSSPRADSEVDN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0642 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 38 164 - -
Lele56g0642 226 SUPERFAMILY RING/U-box 106 165 - -
Lele56g0642 226 SMART ring_2 119 159 IPR001841 -
Lele56g0642 226 MobiDBLite consensus disorder prediction 200 226 - -
Lele56g0642 226 MobiDBLite consensus disorder prediction 200 219 - -
Lele56g0642 226 FunFam E3 ubiquitin-protein ligase RNF181 86 166 - -
Lele56g0642 226 Pfam Ring finger domain 118 160 IPR001841 -
Lele56g0642 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 166 IPR013083 -
Lele56g0642 226 MobiDBLite consensus disorder prediction 36 58 - -
Lele56g0642 226 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0642 Lele-ChrLele56 4798876 4799556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0642 1 199 C3H Transcription Factor Family AT1G26800 46.341 9.27e-55 172