Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0630 ATGGACTTGACCCCTACCCCCACCGCCTCCGCCCACTTTGATTCTCTGCATACTTCAGTCTCAACGCCTACCCGCCCCACCAAGTCTCTCTCTTTCACCAACGGCTCCCTCAAGCGCCACCATCCTTTGCCTCATCCGCCACCGCCCACGGTGGTTTCCTACAAGGAATGTCTGAAGAACCACGCCGCCAGCACTGGCGGCCACGCGCTTGACGGTTGCGGCGAGTTCATGCCTTCCTCCGCCTCCAACCCCAGTGACCCACGTTCCCTCAAATGCGCCGCGTGTGGCTGCCACCGCAATTTCCACCGCCGTGACCCCCAAGAGCTTCCCTCCACCCCCAACTTCTTAAACTGGTTCTATCCGCCGCTGCCGGCTCCACCTCCGCCGCAGCTTGCTCCCCGGGGGTTAAGCCCGAGCACTAGCCCAAGCGTGAGCCCCAGCTTAAGCCCGAACAGCGCCAGTCCGAGCCCGTTATCAAGCCCATCGCCACCACCGGTCTCGCATTTCCCTCCTTCCTACCACTCATCGGCACCGCATATGCTGATAGCACTCGGGAACGCTTATTCTGGTCCGTCCGATGAGCAGCATCATCGGAACTTCATGAATTCTTGGACGATGAAGACGAAGGAGAAGGATAGCCCAGGTGGGAGAAAGAGATGCAGAACGAAATTCAGCCAAGAACAGAAGGAGAAGATGTTTCAGTTCTCAGAGAAATTGGGTTGGAGAATGCAGAAAGGAGTTGATAGAACGGTCCAAGATTTCTGCAACGAGATTGGGGTTTCAAGAGGAGTATTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAGAAAAAAATCAGAAACTGGGAATACCCAACAAACTGAGAAAATCAATGAACAAGGTGATGATGACTGTGCAGCTGGTGGTCGTCCAGGTGGCGGCGGGTTCGATTGTGATATTAACGACAATAATCACAGAAATGAAGGTAGCAGTATTAATATTCAAGTCTCTGTTAATGGATCTTCTTCTTGA 1014 0.5345 MDLTPTPTASAHFDSLHTSVSTPTRPTKSLSFTNGSLKRHHPLPHPPPPTVVSYKECLKNHAASTGGHALDGCGEFMPSSASNPSDPRSLKCAACGCHRNFHRRDPQELPSTPNFLNWFYPPLPAPPPPQLAPRGLSPSTSPSVSPSLSPNSASPSPLSSPSPPPVSHFPPSYHSSAPHMLIALGNAYSGPSDEQHHRNFMNSWTMKTKEKDSPGGRKRCRTKFSQEQKEKMFQFSEKLGWRMQKGVDRTVQDFCNEIGVSRGVFKVWMHNNKNTFRKKSETGNTQQTEKINEQGDDDCAAGGRPGGGGFDCDINDNNHRNEGSSINIQVSVNGSSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0630 337 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 217 274 IPR006455 -
Lele56g0630 337 MobiDBLite consensus disorder prediction 1 50 - -
Lele56g0630 337 SUPERFAMILY Homeodomain-like 212 278 IPR009057 -
Lele56g0630 337 FunFam Zinc-finger homeodomain protein 2 205 278 - -
Lele56g0630 337 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Lele56g0630 337 MobiDBLite consensus disorder prediction 136 155 - -
Lele56g0630 337 MobiDBLite consensus disorder prediction 276 337 - -
Lele56g0630 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Lele56g0630 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 275 - -
Lele56g0630 337 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Lele56g0630 337 MobiDBLite consensus disorder prediction 319 337 - -
Lele56g0630 337 MobiDBLite consensus disorder prediction 126 172 - -
Lele56g0630 337 MobiDBLite consensus disorder prediction 1 36 - -
Lele56g0630 337 Gene3D - 202 278 - -
Lele56g0630 337 MobiDBLite consensus disorder prediction 156 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0630 Lele-ChrLele56 4716538 4717551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0630 1 284 ZF-HD Transcription Factor Family AT5G15210 41.463 2.22e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele56g0630 ZF-HD_dimer 5.7e-29 No_clan