Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0629 ATGCTCTGGGTTCTCCCTTCTCTCTCAGTTTTCATTGGCAACTCTGTTGTTTACTTGTTTGGGTTGATTCTCCAGTTTATTTTCAGGACTCAAAAAGCAGATGGGAAAAATGAGCTTTTCGCTCAACCTGAGGATTCTCAGATTGATGGGTTCAGAGAAGAGCTGATTAATTTCCTGTTTCACAGTAACGAATATGTCCACGATTTTGCAGAAGATGGCATAAAAGAAAGAAAAGATGAAGGAACTGAGAATTCTGTTTCAGAAAAGACAGACTCGAACAGTTTTGAAGATAGTGAGAGCAGAGAAGAGGAGGAGGGAGAGGAAGAAGAAAAGAAAGAAGCTTTCTCTGCTTCTTTGAATGAAGAAGGAGAAGAAGAATTTGAAGCTAGCACGAAAATTAACCCAGAATTTTATGATGGGGGAGTGAAAAACGAGAAAGAAGCAGCAGAGAGCCCTGGTAGCATGGAGGGAATCTCCGAGGTTCATGAAAATGGTATGAGAAGAGTAGAAGAAGAAACAGAGAGCTCTGGTGCCATGGAGGATGGCTCTGTTAATGAAAATAGTAAGAAAAGAGAAGAAGAACATAAAGAAGAAACAGGCATGTCTGCTTTAATGGAGGATGAAGAGATTGAGACAACAGAAGAAGAAGAAGCAAAAGAAGAAACAGGCATGTCTGCAATGGAAGATGAAGAGATTGAGGGAAAAGAAGAAGAAGAAGAAGAAACAGAGATGCCTGCTTTAATCAGTAATAAGTTTGAATACGTGTCAGGAAGGGATATTATTGGGTTCGTAGAAGAACCAACAACAACAATGACCTTTAGTTTTCGTGAATTCTTTGTGAGTCCATATATTTCCGACACAGAAATCTCAGAGAAAGAAAAATCTGCCGGAGCAGAGAGTTTTCAAGAATTTCATCCATCTCCCAATGCCTCTCGAGGGGAAACTCCAGAGCTTGAATCACAGCACAAACCAGTTTTTCAAGAAGCAGCAGCACAGAAAGAAATTTCAGAGCTCAAATCAGAGGATGAAAAATCCATTGGATCACATAGTTTTCGCGAATTTCATCCATCTCCAAATGGCTCTGAGGTAGAAATTTCAGAGCTTAAATCAGAGCACGAACCAGTTTTTCAAGAAGAATCACAGAAAGAAGCTGATCAAGAGCAGAGTTCTCCAAGTTTTCATCCAAGTCCAAGTGTTTCTGAAGAAGGAAACGATGGATCAATTCAAGAGCAGAGGATGTTCCATGGCCATCCTAGTTCTGATCAATTTAGCCTAAAAAGTGAGATCTTTCGAGGGAGAGATTCATCTGATGATGATGAAGATGATTTGGATTTCATTGACAATTCAGTTGAGTCTGATTCAGAATCAGAATCATCAAGCTCAAGTGGTCTCATATGGGCCAACAGTGACAAAACTGATGATTTAATCACATACGAGTTTCTATCATATCAAAAATGTTTCGAAGGATTGGAGCCAGAAACCCTCAAGCTGATGCAAAAGCTAAGAGCCATAGATGAATTCATAGAACTAGCACCTGGGAAAGCCGAGAATGATGAAAAGAAAGGTTCAAAAGAAGAAGAAGAAGAAGATGATGATCTTGAATGGGATGATGATGAATTGGTAGAACAAATGAAAATGGAAATGAGAAATGCAAGACAAGGAGGGCTTCCCACAATTTTAGAGGACGCAGAAGAAGAAGAAGGACAAGAAGTTAATGAGTCCCCAAGAATGGCTGAAGATCTAAGGCCATTGAAGATTGAAGTTCAGAAACTGGAATTCAAGGATCATATCAGAGAAATCCAGAAAGTTCACAAGAGTTATGAAGAGAAAATGAGGAAGCTTGATATCTTGAACTGCCAAACCATGCATGCTCTAGGTCTACGGCAATTGAAAGAGCCAAGTGAGAAGCCTATGATATTAAAGAATTTATTATTATGGTCAAGAAAAGATCAGAAGAAGTCGTCGGAGGCAGTGGTGAGTTTGGTGGAGGAGTTAGAGGTGGTGTATGTGGGCCAGCTTTGTTTGTCGTGGGAGATTCTGTGTTGGGAGTACAAGAAAGCGATTGAGTTGAAACAGTACGACGGCGAATGGGTTCGCCGGTATAATGTGGTGGCTGGAGAATTTCAACTGTTTCAAGTGTTGATGCAGAGGTTCATTGAGAATGAGCCTTTTCAAGGACCCAGGATTCACAATTATGTTAGGAACCGTTGTGTCATTCGGAACCTCCTCCAAGTTCCCACCATTAAAGATGATAGTATGAAGGAGATGACCGAGGATGAAGAAGAAGGTATTTCAAGTGAAAGGTTAGCAGAAATCATCAGAGAATCAATGTACATCTTCTGCAAGTTTGCTCGAGCCGACAAGCACGTCATTAACAACAACACCGTCTTCAAACTTCCTTACCAAACCAAACCAACTCATCTCAAAGACCCTTCCACTTATCTTCTTCTTGCAGACATTCAAACCCACCTCCACAAGAAGGAGAAGAGGCTGAAGGACATAGTGAGAACTGGGAATTGCATAGTGAGGAAGTTTCAGAAGCAGAGTGAAGATAAAGTGAAGCTTGATCTTGAGCAGATGGTGGCTCAGGTTCAGTTGAAGTTGATATCAAGAGTTCTGAGTATGCCAAAGTTGAGAAAAGATCAGTTAATTTGGTGCAATGACAAGTTAAATAGGATTACTTTTGTTGACACCAAAGTCCATCGTCTCACATATCGCAAACGTCACAGCTATGCTACCAAATCCAACCAACATAGGGTTGTGAAAACCCCAGGGGGTAAGCTCGTTTATCAGACAACTAAGAAGAGGGCTAACGGGCCCAAGTGCCCTGTAACAGGCAAGAGGATTCAAGGGCTGAATTCACGCTGTGAAATGTTGATCAAGCAGGGCGAAAAATGGATTTATGTTCAACTGATTCCACACTTGAGGCCTGCTGAATACAAGAGGTCGAGGTTACCTAGAAACCGAAGGACTGTGAACCGTACATATGGTGGAGTTTTGTCTGGAAGTGCTGTCAGAGAAAGGATCATTCGAGCCTTCTTGGTTGAAGAGCAAAAGATTGTCAAAAAGTTGTTGAAGATGCAGAAGGCCATGGAAAAGAAATCCTTGAAGGGTTAA 3117 0.4113 MLWVLPSLSVFIGNSVVYLFGLILQFIFRTQKADGKNELFAQPEDSQIDGFREELINFLFHSNEYVHDFAEDGIKERKDEGTENSVSEKTDSNSFEDSESREEEEGEEEEKKEAFSASLNEEGEEEFEASTKINPEFYDGGVKNEKEAAESPGSMEGISEVHENGMRRVEEETESSGAMEDGSVNENSKKREEEHKEETGMSALMEDEEIETTEEEEAKEETGMSAMEDEEIEGKEEEEEETEMPALISNKFEYVSGRDIIGFVEEPTTTMTFSFREFFVSPYISDTEISEKEKSAGAESFQEFHPSPNASRGETPELESQHKPVFQEAAAQKEISELKSEDEKSIGSHSFREFHPSPNGSEVEISELKSEHEPVFQEESQKEADQEQSSPSFHPSPSVSEEGNDGSIQEQRMFHGHPSSDQFSLKSEIFRGRDSSDDDEDDLDFIDNSVESDSESESSSSSGLIWANSDKTDDLITYEFLSYQKCFEGLEPETLKLMQKLRAIDEFIELAPGKAENDEKKGSKEEEEEDDDLEWDDDELVEQMKMEMRNARQGGLPTILEDAEEEEGQEVNESPRMAEDLRPLKIEVQKLEFKDHIREIQKVHKSYEEKMRKLDILNCQTMHALGLRQLKEPSEKPMILKNLLLWSRKDQKKSSEAVVSLVEELEVVYVGQLCLSWEILCWEYKKAIELKQYDGEWVRRYNVVAGEFQLFQVLMQRFIENEPFQGPRIHNYVRNRCVIRNLLQVPTIKDDSMKEMTEDEEEGISSERLAEIIRESMYIFCKFARADKHVINNNTVFKLPYQTKPTHLKDPSTYLLLADIQTHLHKKEKRLKDIVRTGNCIVRKFQKQSEDKVKLDLEQMVAQVQLKLISRVLSMPKLRKDQLIWCNDKLNRITFVDTKVHRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRANGPKCPVTGKRIQGLNSRCEMLIKQGEKWIYVQLIPHLRPAEYKRSRLPRNRRTVNRTYGGVLSGSAVRERIIRAFLVEEQKIVKKLLKMQKAMEKKSLKG 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0629 1038 MobiDBLite consensus disorder prediction 161 175 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 76 245 - -
Lele56g0629 1038 Coils Coil 597 617 - -
Lele56g0629 1038 PANTHER OS09G0413600 PROTEIN 215 902 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 365 385 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 334 350 - -
Lele56g0629 1038 Pfam Ribosomal protein L34e 900 954 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lele56g0629 1038 Pfam Ribosomal protein L34e 970 1014 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lele56g0629 1038 MobiDBLite consensus disorder prediction 184 203 - -
Lele56g0629 1038 Pfam Protein of unknown function (DUF1666) 664 902 IPR012870 -
Lele56g0629 1038 Coils Coil 210 230 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 204 243 - -
Lele56g0629 1038 Gene3D - 900 935 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 76 96 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 386 426 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 513 534 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 111 132 - -
Lele56g0629 1038 ProSitePatterns Ribosomal protein L34e signature. 913 926 IPR018065 -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 289 468 - -
Lele56g0629 1038 PRINTS Ribosomal protein L34 signature 924 941 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lele56g0629 1038 PRINTS Ribosomal protein L34 signature 911 924 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lele56g0629 1038 PRINTS Ribosomal protein L34 signature 942 952 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lele56g0629 1038 Gene3D - 966 1038 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 437 451 - -
Lele56g0629 1038 MobiDBLite consensus disorder prediction 452 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0629 Lele-ChrLele56 4703127 4709971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0629 900 1037 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 74.638 1.09e-57 192