Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele56g0616 | ATGGCTGATCTTCAGAAAACGGTTTTTGGCGATAGGAATATCGAACAGGCAATTACATCTCTTAAGAAAGGTGCATATCTACTAAAGTACGGGCGTAGGGGGAAGCCAAAGTTCTGCCCATTTCGGCTTTCCAGTGATGAATCTCAACTCATATGGTATGCTGGAAAGGATGAGAAACAACTAAAGCTCAGTGCTGTTTCAAAAATCATTCCGGGGCAACGAACTGCCATATTTCAGCGGTATCCTCGGCCTGAAAAGGAGTATCAATCATTTTCACTTGTATACAATGATAGGTCCTTGGATTTGATTTGTAAGGACAAGGATGAAGCTGAAACCTGGTTTGCTGGTCTTAAGGCATTAATTAACCGTGGTAATGATCACAAATGGAGGTATGAATCAAGAAGCGAAAGTGCTGGTTCTGATAGTCCACAGCATCGCCCCCAAAGAAATTCCCCATTTTGTGCACCATTTCAGGACCTGGTGGATACAGAAGAATTTTCTTTTGACAGTACTTCAGAAAATAGATTGGGAAAGGCTTTCTCTGAAATTATTTCATATACTGCAGCTGGCAAGAGTCCCTGTCAAGCTGAATCAAATGCAAATTCCTGTGCATCTCCTGGGTCTGGGGATAACTCAAACAATCGAAATTCTACTGCTGAGCCAATTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGCCATAGTTCTTATCAAGAAGATTTTGATGCTATAAGAGATGCTTTTATTTTTGGAGAAGGTATTGGTGATGGAATCCTTGGTGGTGGTTTGCATAGACTTGGAACTTCATCTGGTTCTGAGATGGATGCATTTCTCCCCAAGGCATTGGAATCAAAAGTAGTTCTGGATGTTCAGAGTATTGCTTGTGGTTACAAACATGCTGCTCTAGTTACCAAGCAAGGAGAGGTATATAGTTGGGGGGAGGAATCAGGAGGCAGGCTAGGGCACGGTGTAGAAGTGGATGTTTCTCACCCTAAACTCATTGACACTCTTAATGGCATGAATATGGAATTAGTAGCATGTGGAGAGTATCACACTTGTGCTGTCACATTTTCTGGGGATCTTTATACCTGGGGTGATGGCGTTCACAATTCTGGATTACTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAGAGTAAGCGGTAACATGGAAGGCGTACATGTATCCTATGTATCTTGTGGACCTTGGCACACAGCGATTGTAACATCTTCTGGTCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCTAGGAGATCTTAGTAGCACAAATACTCCTAGGGAAGTAGAAACTTTGAAAGGGTTGAGAATAACCAGAGTCTCCTGTGGTGTTTGGCACACTGCTGCTGCTGTTGAGGTGGCCGCTGAATCTATGGAATCTTCTAGACACTTACCCATAGGAAAACTATTCACCTGGGGTGATGGGGATAAAGGCCAACTGGGACATGGTGATAGTGAACCTAGAATAGTTCCCCAGTGTGTTATTGCATTGGATAACCAAAATATTTGTCAAGTGGCTTGTGGTCAGAGTCTCACTGTTGCTTTGACAGCCTCAGGACATGTATATACAATGGGCAGTACTGCTTATGGGCAACTTGGCAGTCCTGCGGCTGATGGAAAATTCCCTACACGGGTTGAAGGTAAAATTGCTGGTAGTTTCATAGAAGATATTGCCTGTGGTTCAAATCATATTGGAGTACTGACTTCCAAAGCAGAGGTTTACACCTGGGGAAAGGGTTCTAATGGGCAGCTAGGTCATGGAGACAATGGTCACCGAGATACACCTACACTTGTTAAGTTTTTTAAAAATAAGCAAGCAAGGAGCGTTGTTTGTGGTTCAAACTTCACTGCTGTTATATGTCCTCATAAATGGGTATCAAGTGCTGACCAATCTGTGTGTTCTGGTTGTCACAATCCTTTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGGCTTGTTTTTTGCTCAGCATGCAGCAGTAGAAAGTCTACTAAAGCTTCTCTTGCTCCAAATTCAAACAAGCCACATCGTGTTTGCGATGACTGTCATTCTAAACTTAAGAAGGCCACGGAATCTGTTTCCTTGACAAAAACTTTTACATTGAAGAATTTGCCTGACTCTTGGGCTGGTAAATTACAGGGAAAACTAGTAAGGCTTTCATCTTTTGGCTCTACTGTTCAAGCAGAAAGCAGGCACCCAAAGATCCCAGAACCACATCATAGCCATGTTTTTCCAGCTCTGAATGGAAAACTACAGTTGGGGGGATTCAGTCCTCTAAATGCATCAAATTCTCTTGCTGGAGCATTAGAGAAGCCCCTGTCAGTTTCTGTGCCTGCAAGTGGTTTGAACTCTGAAGTGTCATCTCCAGTTTCAGAAAAGTTGAGCCCACGATGGTCTTCTGAAGATGTCCGTGATGATTCAAAGCATAGAAATAGCATTTTAAGCCAGGAGGTTATAAGTTTAAGGGCACAGGTTGAGGATCTTACTCTTAAATCCAAACATCTTGAGGCTGAACTGGAGAGGACATCAAAGCAATTAAAGGAAGTGACTGCAGTAGCAGCAGAAGAAGCCGAAAAGTGTAAATCTGCTAAAGAGGTTATAAAGTCACTGACTGCTCAGTTGAAGGACATGGGGCAAAGAGTTCCAGAGGGAGGTATTGCGAACTCTAGTGCAGACTTCTCTGCTGAAATTACCTCTAATGTTATAAATCAGTCGTTAAATGAGAGCCATATAACAAACAGTATCACTCCTGAAACTGAGTCCGACAGCAATGCAGAAAATCGGATATTGCCAAGTATTTCCAAAGCACAAAGTGGAAAATCAGAGTGGGTGGTGCAAGATGAACCAGGTGTATACATAAGTTTGTCCTCCTTGCCAGGTGGTGGCAATGAACTTAAACGCGTGCGTTTCAGTCGGAAACATTTCACAGAACAGGAAGCTGAAAAGTGGTGGGCTGAAAATGGGACCAAAGTTTTGGAGCGGCACAATGTAGTTGCTTCATAG | 3048 | 0.4288 | MADLQKTVFGDRNIEQAITSLKKGAYLLKYGRRGKPKFCPFRLSSDESQLIWYAGKDEKQLKLSAVSKIIPGQRTAIFQRYPRPEKEYQSFSLVYNDRSLDLICKDKDEAETWFAGLKALINRGNDHKWRYESRSESAGSDSPQHRPQRNSPFCAPFQDLVDTEEFSFDSTSENRLGKAFSEIISYTAAGKSPCQAESNANSCASPGSGDNSNNRNSTAEPIRVSLSSAVSSSSHSSYQEDFDAIRDAFIFGEGIGDGILGGGLHRLGTSSGSEMDAFLPKALESKVVLDVQSIACGYKHAALVTKQGEVYSWGEESGGRLGHGVEVDVSHPKLIDTLNGMNMELVACGEYHTCAVTFSGDLYTWGDGVHNSGLLGHGNEVSHWIPKRVSGNMEGVHVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGLGDLSSTNTPREVETLKGLRITRVSCGVWHTAAAVEVAAESMESSRHLPIGKLFTWGDGDKGQLGHGDSEPRIVPQCVIALDNQNICQVACGQSLTVALTASGHVYTMGSTAYGQLGSPAADGKFPTRVEGKIAGSFIEDIACGSNHIGVLTSKAEVYTWGKGSNGQLGHGDNGHRDTPTLVKFFKNKQARSVVCGSNFTAVICPHKWVSSADQSVCSGCHNPFGFRRKRHNCYNCGLVFCSACSSRKSTKASLAPNSNKPHRVCDDCHSKLKKATESVSLTKTFTLKNLPDSWAGKLQGKLVRLSSFGSTVQAESRHPKIPEPHHSHVFPALNGKLQLGGFSPLNASNSLAGALEKPLSVSVPASGLNSEVSSPVSEKLSPRWSSEDVRDDSKHRNSILSQEVISLRAQVEDLTLKSKHLEAELERTSKQLKEVTAVAAEEAEKCKSAKEVIKSLTAQLKDMGQRVPEGGIANSSADFSAEITSNVINQSLNESHITNSITPETESDSNAENRILPSISKAQSGKSEWVVQDEPGVYISLSSLPGGGNELKRVRFSRKHFTEQEAEKWWAENGTKVLERHNVVAS | 1015 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele56g0616 | 1015 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 217 | 468 | - | - | |
| Lele56g0616 | 1015 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 955 | 1010 | IPR013591 | - | |
| Lele56g0616 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 376 | IPR000408 | - | |
| Lele56g0616 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 521 | 539 | IPR000408 | - | |
| Lele56g0616 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 579 | 600 | IPR000408 | - | |
| Lele56g0616 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 417 | 431 | IPR000408 | - | |
| Lele56g0616 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 310 | 326 | IPR000408 | - | |
| Lele56g0616 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 401 | 417 | IPR000408 | - | |
| Lele56g0616 | 1015 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 294 | 304 | IPR000408 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | BRX domain profile. | 956 | 1011 | IPR013591 | - | |
| Lele56g0616 | 1015 | CDD | PH_PLC_plant-like | 12 | 122 | - | - | |
| Lele56g0616 | 1015 | Pfam | FYVE zinc finger | 636 | 702 | IPR000306 | GO:0046872 | |
| Lele56g0616 | 1015 | SUPERFAMILY | FYVE/PHD zinc finger | 636 | 711 | IPR011011 | - | |
| Lele56g0616 | 1015 | Gene3D | - | 180 | 370 | IPR009091 | - | |
| Lele56g0616 | 1015 | Gene3D | - | 371 | 468 | IPR009091 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 584 | 635 | IPR000408 | - | |
| Lele56g0616 | 1015 | SMART | fyve_4 | 634 | 703 | IPR000306 | GO:0046872 | |
| Lele56g0616 | 1015 | Gene3D | - | 13 | 128 | IPR011993 | - | |
| Lele56g0616 | 1015 | MobiDBLite | consensus disorder prediction | 132 | 154 | - | - | |
| Lele56g0616 | 1015 | SUPERFAMILY | PH domain-like | 14 | 121 | - | - | |
| Lele56g0616 | 1015 | SUPERFAMILY | RCC1/BLIP-II | 267 | 637 | IPR009091 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 415 | 466 | IPR000408 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 360 | 414 | IPR000408 | - | |
| Lele56g0616 | 1015 | MobiDBLite | consensus disorder prediction | 136 | 151 | - | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 308 | 359 | IPR000408 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 532 | 583 | IPR000408 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 640 | 702 | IPR017455 | - | |
| Lele56g0616 | 1015 | MobiDBLite | consensus disorder prediction | 794 | 821 | - | - | |
| Lele56g0616 | 1015 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 650 | 709 | IPR013083 | - | |
| Lele56g0616 | 1015 | Pfam | Transcription factor BRX N-terminal domain | 870 | 897 | IPR027988 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | PH domain profile. | 20 | 122 | IPR001849 | - | |
| Lele56g0616 | 1015 | MobiDBLite | consensus disorder prediction | 193 | 218 | - | - | |
| Lele56g0616 | 1015 | CDD | FYVE_like_SF | 646 | 698 | - | - | |
| Lele56g0616 | 1015 | Gene3D | - | 474 | 649 | IPR009091 | - | |
| Lele56g0616 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 480 | 531 | IPR000408 | - | |
| Lele56g0616 | 1015 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 57 | 890 | - | - | |
| Lele56g0616 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 480 | 528 | IPR000408 | - | |
| Lele56g0616 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 308 | 356 | IPR000408 | - | |
| Lele56g0616 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 531 | 578 | IPR000408 | - | |
| Lele56g0616 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 359 | 410 | IPR000408 | - | |
| Lele56g0616 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 414 | 462 | IPR000408 | - | |
| Lele56g0616 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 585 | 632 | IPR000408 | - | |
| Lele56g0616 | 1015 | Coils | Coil | 833 | 895 | - | - | |
| Lele56g0616 | 1015 | MobiDBLite | consensus disorder prediction | 794 | 810 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele56g0616 | Lele-ChrLele56 | 4573187 | 4579977 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele56g0616 | 954 | 1012 | Major Intrinsic Protein MIP | AT1G31880 | 54.237 | 4.28e-16 | 79.3 |