Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0613 ATGTCTAGCAGAAGATCTCGTTCCACAGAGATTAGTGATGCTCAGATCAACGATCTCGTCTCCAAGTTACAACGCCTCATTCCCGAGCTTCAAGCCCCTCGCTCCCACCACAAGCAGGTATCGGCGGGGAAGGTGTTGAAGGAGACATGCAACCGCATAAAGAAGTTGCAGAGAGAAGTGGATGATCTGAGTGACAGATTATCAGAGCTTTTGGCCACTACTGACTCCGACACCGCTGAAGCTGCCATTGTTAGGAGCTTGCTTGTGTAG 270 0.5037 MSSRRSRSTEISDAQINDLVSKLQRLIPELQAPRSHHKQVSAGKVLKETCNRIKKLQREVDDLSDRLSELLATTDSDTAEAAIVRSLLV 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0613 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 74 IPR036638 GO:0046983
Lele56g0613 89 Pfam Helix-loop-helix DNA-binding domain 15 57 IPR011598 GO:0046983
Lele56g0613 89 Gene3D - 5 84 IPR036638 GO:0046983
Lele56g0613 89 Coils Coil 46 73 - -
Lele56g0613 89 PANTHER TRANSCRIPTION FACTOR PRE 1 88 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0613 Lele-ChrLele56 4522089 4522437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0613 1 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 57.447 3.28e-26 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0613 HLH 0.00025 No_clan