Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0611 ATGAGCTGGTCAATGCACACAAGCTGTTTGATTTATGTCCTGAGAAAGATTAACTGTGTGCATATGAACGGCCTTGACACCAAATTCTACCTCAATGGTTGTTTAAGGCCAATCGTAGCAAGCGATGAAATGGCTTTCTTCCCAGCAAATTTCATGTTACAGAACCCTCATCAAGAAGACCACCACCAACCTCCACCATCTCTCAACTCAATTCTACCTCAAGATTATCATGGAGGGGCGTCTCTTCTGGGGAAGAGATCTATGACATTTTCAGGACTTGAACTTGGAGGTGAAGAAGGAAACAATGGTGATGAAGACTTGTCTGATGATGGATCTCAAGCTGGGGAGAAGAAGAGAAGGCTGAACATGGAACAAGTGAAAGCACTTGAGAAGAGCTTTGAGCTTGGAAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGCCTGCAACCTAGGCAGATTGCTATATGGTTCCAGAACAGAAGAGCAAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATCTTCTCAAAAGACAATATGATGACATCAAAGCTGATAATGATGCCCTTCAAGCTCAAAACCAACAACTCCAAGCAGAGATATTGGCACTGAAAAGCAGAGAAGTACCAACTGAATCTATAAACCTGAATAAGGAAACTGAGGGATCTTGCAGCAATCGGAGTGAGAATAGTTCAGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGATAGTCCTATATCAACTCATCATCATCATCAGATTACAAGCAGAAACTTATTTCCATCATCAGCATCTAATAATTCTGCAGCTAGGCCTTCTTCAGGAGGAGTGGCTCAGCTTTTTCAAACCTCTTCAAGACCAGAGCTTCATTGCCATAATCAGAAGAATATTGATCTTATGGTCAAAGAAGAGAGCTTGAGCAACATGTTTTGTGGGATTGATGATCAAACTGGGTTCTGGCCTTGGTTGGAGCAGCAACATTTCAATTGA 1011 0.4194 MSWSMHTSCLIYVLRKINCVHMNGLDTKFYLNGCLRPIVASDEMAFFPANFMLQNPHQEDHHQPPPSLNSILPQDYHGGASLLGKRSMTFSGLELGGEEGNNGDEDLSDDGSQAGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDDIKADNDALQAQNQQLQAEILALKSREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPISTHHHHQITSRNLFPSSASNNSAARPSSGGVAQLFQTSSRPELHCHNQKNIDLMVKEESLSNMFCGIDDQTGFWPWLEQQHFN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0611 336 PRINTS Lambda-repressor HTH signature 152 168 IPR000047 GO:0003677
Lele56g0611 336 PRINTS Lambda-repressor HTH signature 143 152 IPR000047 GO:0003677
Lele56g0611 336 SMART HOX_1 115 176 IPR001356 GO:0003677
Lele56g0611 336 Pfam Homeodomain 117 170 IPR001356 GO:0003677
Lele56g0611 336 Gene3D - 109 178 - -
Lele56g0611 336 MobiDBLite consensus disorder prediction 93 119 - -
Lele56g0611 336 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677
Lele56g0611 336 Coils Coil 164 212 - -
Lele56g0611 336 FunFam Homeobox-leucine zipper protein ATHB-13 109 176 - -
Lele56g0611 336 MobiDBLite consensus disorder prediction 265 285 - -
Lele56g0611 336 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981|GO:0006355
Lele56g0611 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 102 298 IPR045224 GO:0003700
Lele56g0611 336 SUPERFAMILY Homeodomain-like 108 174 IPR009057 -
Lele56g0611 336 MobiDBLite consensus disorder prediction 218 237 - -
Lele56g0611 336 Pfam Homeobox associated leucine zipper 172 212 IPR003106 GO:0006355|GO:0043565
Lele56g0611 336 CDD homeodomain 117 173 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0611 Lele-ChrLele56 4507304 4510089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0611 44 336 Homeobox Transcription Factor Family AT1G69780 60.396 3.78e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele56g0611 Homeodomain 1.7e-15 CL0123