LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g0608	ATGCATCCGTTGCCCAGCGTCCATTACAATAAACCCTTCAAGCACAGAGATATGAGGAAGCTGAAGCAGCAGCAGGAGCTGGGTAAGGAAGAAGAATCTCAGAAGAAGGAGCGTCATATTGTGACGTGGACACAAGAGGAAGATGATATTTTGAGGAAGCAGATAAGCATCCATGGAACTGAGAATTGGGCAATTATTGCATCTAACTTCAAAGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAACTCCGATTTCAAGAAAGGAGGATGGTCACCGGAGGAAGACTTGCTCTTATGTGAGGCTCAGAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCTGTGAAAAACCGTTTCTCCACTCTGTGCAAGAAGAGAGCGAAATTTGAAGCCTTGGCAAAAGAGAACAACACTTCATTCACTAATTCAAACAACAAAAGAACTATTTTCCAACAGGGTGACAGCAGAGAGTCAACATCAGAGGTTGCGCCGCCTGAAAAGAAGATGAGGAGAGCCCATATCCCTGATGCTGCAGAAAGGATCAACTATGGAGACAGATCCCACAAGCAATATGAAGCAGCAATAAAACAGCAGCCAAGAGCGCCATTTTCGATTTTGGCTCAGAACTTGCCAAATCAGCATGAAGCCTCCAAGGACAAGCTCAGCACTAATGCCCATAATTCCAAGACTCAAGGAACATTTCTTAAAGAGGATGATCCAAAGATAAGTCTGTTGATGCAACAATCAGAGTTATTAAGTTCACTAGCTCTAAAAGTTAATACAGATGACGTGGACCAGAGTCTTGAAGATGCATGGAAGGTGCTTCAAGAGTTTCTGAACCAAACCAAAGAATCAGATATTCTCAAATATAAGATTTCGGATTTACAGCTTGTAGATCTTAAATATATGATGGAGGAATTCAAGAGTAGTAATGAGGGGAGCCAAAAATGTTGGAGGCAACCAGAACTATACGAAGACTCTTCAAGCAGTTCTGAATACAGTACAGGATCAACTCTTCTGCCCCGTTCAGCAAGTGATAATCTGGAACACTCTCAGCTTCAGGATATTGGAACTGATCCAAAGCCTATCCAACTTGGAGATCAAAAAGGAGTAAGTGAATGTGGGAAAGAGGATTTCTCTTCTGCAACTATTGGTCAAGTGGCAGATATCTTCCCATCTTGTGAGGAACAGATAAGCAATGATGGCATTGCTTCTACCTCATCAAGCATAGAGTTCAATTCCCCTCTTCAAGTTACCCCTATGTTCAGATCATTGGCTGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTTTGGCAATGGAAGTTTCAAAACTTACCTCCCTCTCCCCTTCTAGAATCATCTATCTCTACCCTTGGCAATTTGGACTCAGTTCTTCTTCACTTGGTTTTGAGATAAGATTCCTGAGATTGCAACCTCATTGTCTTAATGATCCTAAGATTCCGAAGAAGGCCTCGTCATCTTCCTCTCCCCAAGAATGCTCTGGTGCATTCTTGTGA	1560	0.4244	MHPLPSVHYNKPFKHRDMRKLKQQQELGKEEESQKKERHIVTWTQEEDDILRKQISIHGTENWAIIASNFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKFEALAKENNTSFTNSNNKRTIFQQGDSRESTSEVAPPEKKMRRAHIPDAAERINYGDRSHKQYEAAIKQQPRAPFSILAQNLPNQHEASKDKLSTNAHNSKTQGTFLKEDDPKISLLMQQSELLSSLALKVNTDDVDQSLEDAWKVLQEFLNQTKESDILKYKISDLQLVDLKYMMEEFKSSNEGSQKCWRQPELYEDSSSSSEYSTGSTLLPRSASDNLEHSQLQDIGTDPKPIQLGDQKGVSECGKEDFSSATIGQVADIFPSCEEQISNDGIASTSSSIEFNSPLQVTPMFRSLAAGIPSPQFSESLAMEVSKLTSLSPSRIIYLYPWQFGLSSSSLGFEIRFLRLQPHCLNDPKIPKKASSSSSPQECSGAFL	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g0608	519	CDD	SANT	42	86	IPR001005	-
	Lele56g0608	519	ProSiteProfiles	Myb-like domain profile.	43	86	IPR001005	-
	Lele56g0608	519	PANTHER	MYB PROTEIN-RELATED	42	208	-	-
	Lele56g0608	519	Gene3D	-	32	91	-	-
	Lele56g0608	519	SUPERFAMILY	Homeodomain-like	39	133	IPR009057	-
	Lele56g0608	519	MobiDBLite	consensus disorder prediction	228	247	-	-
	Lele56g0608	519	MobiDBLite	consensus disorder prediction	502	519	-	-
	Lele56g0608	519	CDD	SANT	95	136	IPR001005	-
	Lele56g0608	519	MobiDBLite	consensus disorder prediction	340	359	-	-
	Lele56g0608	519	MobiDBLite	consensus disorder prediction	228	245	-	-
	Lele56g0608	519	MobiDBLite	consensus disorder prediction	500	519	-	-
	Lele56g0608	519	Pfam	Myb-like DNA-binding domain	43	102	-	-
	Lele56g0608	519	FunFam	Transcription factor MYB124	35	91	-	-
	Lele56g0608	519	SMART	sant	39	88	IPR001005	-
	Lele56g0608	519	SMART	sant	91	139	IPR001005	-
	Lele56g0608	519	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	87	141	IPR017930	-
	Lele56g0608	519	ProSiteProfiles	Myb-like domain profile.	87	137	IPR001005	-
	Lele56g0608	519	Gene3D	-	94	167	-	-
	Lele56g0608	519	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	35	86	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g0608	Lele-ChrLele56	4477259	4482653	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g0608	31	333	MYB Transcription Factor Family	AT2G02820	61.859	8.87e-132	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele56g0608		Myb_DNA-bind_6	5.5e-15	CL0123