Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0598 ATGGCAGGCACTAAGCGTCCATCACTATTCCTCTTTCAAATTAAAACTGTGGCTTTGATTGCAGAATTTAGGCTTCTCGGTTTCTCACAGAATTCAACTGAGGTGGATATCGAAGTGTTACCATTTGAGTTGCAGATACTTCTTTCTCGTCCCTCCGTGTTGTGTTCCCTTCAACTCTGCCCTCCCCACAGTTTCTATCCAAAGAAGTCCCTTTCTTTTTGCCCTTCTTCAACTTCCCGTGCCTCCAACTTCTTCCTCGCCCTTTCATCCTCCAGCAGAAACCCATTTTATATCAAATGTCGCCAATCCGAGTACTTTAAACAACAAAGCTTCACCAGACCCATCAGAAATGCAAACGGAAACGAAGCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTGGGTCACTCAGTTTACAAAGGGAAGGCTGCGCTTACGGTGACTCCCAGGCCTCCAGAGTTTGCTTCATTGGAGTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATGTAATTAGCCTTGGTGCAAGGGATTCGTGTGAATTTTTTCATGATCCTTTCAAGGGGAAGGGTGATGAAGAAGGTGTTCAAAACAAGATTGAGAACGTGGATGAAAGCATCTATATCCCTATCACAAAAGCAGAGCTATCAGTTTTCAACTCAATTTTCAATTTTATCATGCCATACCTTCTGGGCTGGCATGCGTTTGCAAATTCTATAAAACCAGAGGATCAAAGGCGATTGAATAACGGCAATCCAAGATATGGAGGAGACTTTGAATGGAGCAGATAG 879 0.4448 MAGTKRPSLFLFQIKTVALIAEFRLLGFSQNSTEVDIEVLPFELQILLSRPSVLCSLQLCPPHSFYPKKSLSFCPSSTSRASNFFLALSSSSRNPFYIKCRQSEYFKQQSFTRPIRNANGNEAVGALPPRVYVGHSVYKGKAALTVTPRPPEFASLESGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNVISLGARDSCEFFHDPFKGKGDEEGVQNKIENVDESIYIPITKAELSVFNSIFNFIMPYLLGWHAFANSIKPEDQRRLNNGNPRYGGDFEWSR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0598 292 Gene3D Transcriptional Coactivator Pc4; Chain A 122 225 IPR009044 GO:0003677|GO:0006355
Lele56g0598 292 Pfam Whirly transcription factor 137 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele56g0598 292 Gene3D Transcriptional Coactivator Pc4; Chain A 226 280 IPR009044 GO:0003677|GO:0006355
Lele56g0598 292 SUPERFAMILY ssDNA-binding transcriptional regulator domain 129 292 IPR009044 GO:0003677|GO:0006355
Lele56g0598 292 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 225 292 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0598 Lele-ChrLele56 4407619 4411400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0598 47 292 Whirly Transcription Factor Family AT2G02740 52.788 1.80e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lele56g0598 Whirly 1e-37 CL0609