Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0597 ATGGCATCTCATATCATACCTGGTTTCGCACTACTACGTTACGTTCTCCCTTCGTTTGCGCCAGATCCAACTGAAACAGAGTGGTTTCTGATGTGGCGGTTGTTCTCCCCAGCATCAAATGCTCTTTTCCTCATGATTTCCTACGAAATTTACTCCTCCCGAGCTCCATTTCACGTTCCGAGGTTCTCTACATGGAGGCGAACGAATACGGGGTTCTTGATTTTCCTCCCTTCCAACACCAAGATGAGATTCTTCCCATGCATCGCTTGTAGCGATGATTCCTTTTCGTTGTCAGACCCAAAACAGTTGGGTTATAGTCCTCCTGAGGAATTGTTCGGTCTCGATGTGGAATTCAAGCCGAGCGATGGCAGCTCTCAAACATCGGAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATTAGAGAGTTACCTTGTCCAAGCTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGCGGAATTGAAAGATCAAGATCAGACTGTCCAAAGTGTGGTGGGAAGGGTATTGTTACTTGCCACCAGTGTTCAGGAGCTCGTGTTACTTGGGAAGAATCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCTAAGCGCGTTTACCAGTCACCACCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTGAAAGATCTCAATGCAAAAACCGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCAAGCTTCATGCGCAGAGAGTGGCTGCGATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCGCACCTCTGAAACTATGAAAGCTTTCTTTAGTAACCCAGAAAATCGCCATAAAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAATTGAAGGAAAGTTTGGTGGATCGGCAATTCACGTGCCGGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAGGATAACCCATCGAAATGGCAGACCTGTAAAACTTTATCGCTGTAAAAATTGTCATCAATATGGCCATAATCGCAGGACATGCCCTCAATTACTTGCTACCTCCAAAACGACAGCTTCTCCAAGACCATACAAGTGTCGTTTGTGCCTCAAGAATGGCCACAATATCAGGACATGTCCTACTACTAGAGCTACTAGCAGTACTCAACATGCCCAAGATTAA 1311 0.45 MASHIIPGFALLRYVLPSFAPDPTETEWFLMWRLFSPASNALFLMISYEIYSSRAPFHVPRFSTWRRTNTGFLIFLPSNTKMRFFPCIACSDDSFSLSDPKQLGYSPPEELFGLDVEFKPSDGSSQTSEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCGGKGIVTCHQCSGARVTWEESIDERPWERARSISPLKVKEDDEVDNLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPKLHAQRVAAIKKSKGTDAARKRTSETMKAFFSNPENRHKRSIAMKGVNFFCQNCGREGHRRHYCPELKESLVDRQFTCRLCGEKGHNRRTCSKLRITHRNGRPVKLYRCKNCHQYGHNRRTCPQLLATSKTTASPRPYKCRLCLKNGHNIRTCPTTRATSSTQHAQD 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0597 436 Pfam Zinc knuckle 404 424 IPR025829 -
Lele56g0597 436 SUPERFAMILY Retrovirus zinc finger-like domains 317 363 IPR036875 GO:0003676|GO:0008270
Lele56g0597 436 SUPERFAMILY Retrovirus zinc finger-like domains 368 426 IPR036875 GO:0003676|GO:0008270
Lele56g0597 436 Gene3D - 374 435 - -
Lele56g0597 436 ProSiteProfiles Zinc finger CCHC-type profile. 320 335 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 SMART c2hcfinal6 377 393 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 SMART c2hcfinal6 319 335 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 SMART c2hcfinal6 408 424 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 SMART c2hcfinal6 346 362 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 ProSiteProfiles Zinc finger CCHC-type profile. 347 362 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 ProSiteProfiles Zinc finger CCHC-type profile. 377 393 IPR001878 GO:0003676|GO:0008270
Lele56g0597 436 Gene3D - 311 363 - -
Lele56g0597 436 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 104 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0597 Lele-ChrLele56 4403449 4407466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0597 55 430 C2H2 Transcription Factor Family AT5G20220 58.291 2.21e-154 441