Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0594 ATGAGGGTATTGTTAATTGTGAAGAATTTTAATTTAGCTATTAATGCTTCCAATGCACAAGAACATAGAAGCAACTCTGGACCTACACCTCTCAAAACATGGTTCTGGAATTTTAAACTGCTTCTGGTTTTCAAGAAATCATTTGTTAAAATTCGATCTCCCTCTATCATCAATATTTATGCAAAACCTCAACATTGTCTAGCAATGACTACAATTCAGACAGATAATCATGGAGAGCCTCAAAGAACTGATCTGAATTGCAAAGAAACTGCTAAGACTCAGAATTCGGCGTCGTCATTTAAAAGATGGGGTAGAAAATATCCATTTGTCAGATATGGGCTTCCAATGATATCTCTTACTGTCCTTGGGGCTATTGGACTTGGTCATCTCTTGCAAGGCAGCAAGGACATTGCGAAGGTGAAAGATGATCAAGAATGGGAAATAATTGAAACAAGAAAAGCACTGTCTAGAACTGGGCCAGTAGATGCGTATAACCCAAAAAAGATTTCATTGGAGGAGGAGTTGCAGGCCTTACAAAAGAAGGTGGACATCAACAAATACGATTACAAGAAAATTCCTAAACCAAATGAAGGCAAGCTAAAGTCAAAAGGTTGGAAAAAAAATAATAAAAATATGGGGAAAATAAACAGAAATAGTCCCTTATTTTCTTTCTTTTTCTTAATCTGCTGGGTAGCCATTCCTACCCTCCATGCGAATGTGTTAGAGAATGAATCTTATTGGCAAGCGCATGCCAAAGAATTTGATCAGTATTGGCATGAAAGAGCCAACGAAGCTGAAAAGATCAACAAGGAACAATATCAATCTAACCCCTTTGAAGTCGTGGGCAACCTCACCGCCAGTGTTGATAGAATGCTGCTTGGCAGAGGGGATGGAGGAAGGAACTTGAGACAACGTCTTGGCGTCATTCGTGAAGGTGCATGCATGGCCACCAACCCAATTGATAGGTGCTGGAGATGCGATCCCAACTGGGAGAAAGACCGACAGAAGTTGGCTGATTGTGCACTAGGTTTTGGGAAAGGCACAACTGGTGGAAAGGGTGGTCCGTACTATGTGGTGACAGATCCCTCAGATGATGATATGCTTAACCCCAAAGAAGGTACCCTTAGGCATGCAGTTACAAGGAAGGGTCCCTTGTGGATTATCTTTAAACACAGCATGGTGATTAAGCTGCAACAGGAGCTAATTATGGCTGGGGATAAGACTATTGATGGCAGAGGAGCTTATGTCGTAATCACAGGAGGGGCCGGCATTACCATCCAGTATATCAAGAATGTGATCATTCATAACATTAAGATCTTCAACATAGTGCCTACCAGTGGTGGAATGATTAGAGATAGTGAAGAACATTATGGTTTGAGGACACAAAGCGATGGTGATGGGATTTCAATCTTTGGCTCCAGCAAAGTCTGGATTGATCATATTTCCATGAGCAATTGCGGAGATGGACTCATAGATGCCATCATGGGATCCACTGCCATTACCATCTCCAACGGCCATTTCACAAGGCACAATGAGGTGATGTTGTTTGGTGCCAGTGACAGCTATGGAGGAGACAAGATTATGCAAATCACAGTGGCATTCAATCACTTTGGACAGGGATTAATCCAAAGGATGCCAAGGTGCAGGTGGGGTTTCTTTCATGTTGTTAACAATGATTACACTCATTGGGAAATGTACGCCATTGGCGGCAGCAAGCAGCCTACCATCATCAGTGAGGGTAACAGATTCATAGCCCCGAATAACATATTTTCCAAAGAGGTGTGTAAGAGAGAGTACTCACCAGAGGAAGTGTGGAAGAACTGGCAATGGAGATCAATCAACGACCTACTCATGAACGGAGCTACGTTCGCGCAATCTGGGATGAATCTTCCAGTGTCCACGCGTGACATGCTCAAGGCCAGGCCTGGATCATACGCCTCAAGACTCACACGCTTTTCCGGAATCATCAAGTGCCACGTGGGTCAGCCCTGCTAA 1995 0.4316 MRVLLIVKNFNLAINASNAQEHRSNSGPTPLKTWFWNFKLLLVFKKSFVKIRSPSIINIYAKPQHCLAMTTIQTDNHGEPQRTDLNCKETAKTQNSASSFKRWGRKYPFVRYGLPMISLTVLGAIGLGHLLQGSKDIAKVKDDQEWEIIETRKALSRTGPVDAYNPKKISLEEELQALQKKVDINKYDYKKIPKPNEGKLKSKGWKKNNKNMGKINRNSPLFSFFFLICWVAIPTLHANVLENESYWQAHAKEFDQYWHERANEAEKINKEQYQSNPFEVVGNLTASVDRMLLGRGDGGRNLRQRLGVIREGACMATNPIDRCWRCDPNWEKDRQKLADCALGFGKGTTGGKGGPYYVVTDPSDDDMLNPKEGTLRHAVTRKGPLWIIFKHSMVIKLQQELIMAGDKTIDGRGAYVVITGGAGITIQYIKNVIIHNIKIFNIVPTSGGMIRDSEEHYGLRTQSDGDGISIFGSSKVWIDHISMSNCGDGLIDAIMGSTAITISNGHFTRHNEVMLFGASDSYGGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVVNNDYTHWEMYAIGGSKQPTIISEGNRFIAPNNIFSKEVCKREYSPEEVWKNWQWRSINDLLMNGATFAQSGMNLPVSTRDMLKARPGSYASRLTRFSGIIKCHVGQPC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0594 664 Pfam Pectate lyase 406 583 IPR002022 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 400 416 IPR018082 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 608 632 IPR018082 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 544 563 IPR018082 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 364 389 IPR018082 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 464 485 IPR018082 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 340 357 IPR018082 -
Lele56g0594 664 PRINTS Pollen allergen Amb family signature 566 585 IPR018082 -
Lele56g0594 664 SMART amb_all 392 589 IPR002022 -
Lele56g0594 664 Pfam Pectate lyase, N terminus 252 292 IPR007524 GO:0030570
Lele56g0594 664 Pfam Cytochrome c oxidase assembly protein COX16 110 197 IPR020164 GO:0031966
Lele56g0594 664 PANTHER PECTATE LYASE 18-RELATED 265 662 IPR045032 GO:0030570
Lele56g0594 664 SUPERFAMILY Pectin lyase-like 318 651 IPR011050 -
Lele56g0594 664 Gene3D - 317 657 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0594 Lele-ChrLele56 4384787 4391017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0594 215 664 Polysaccharide Lyase AT1G14420 53.004 1.51e-175 506