Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0578 ATGGGAGCTGGCGACTACTACAGGATCCTCAAGGTGAATCGTAATGCCACCGATGAGGAGCTCAAGAAGGCGTACAAGAGATTGGCTATGAAATGGCATCCAGATAAGAATCATCAACAATCTGTCAAGAAAGAGGACGCTGAGGCTAAATTCAAGCAGATATCTGAGGCTTATGATGTTCTCAGCGATCCCAAGAAGCGTCAGATCTATGATTTTTATGGTCATTATCCACTCAATTCTAGTCGGGTTGACAGAAAAGACCGTACGAATGAGGAAACTGGGAGCCAGAAGGACAAGAAGGTGGGGGCGATTGAGGCTAAATTGGCTTTTAGCCTCGAGGAACTTTACAAAGGTTGCAAAAGGAAGATGAAAGTCTCCCGGAATGTTCCTGATGAATTTGGGAAGTTGTACACTGTTGAAGAAACCTTAAAGATTGATATTAAACCTGGCTGGAAGAAGGGCACAAAAATAACTTTTCCAGAGAAAGGGCACCAAGAACCAGGATGTGCACCAGCAGATCTAATCTTTGTGGTCGACGAGAAAGCTCATGCGTTATTCAAGAGAGATGGAAATGACTTGGTTATCATCCAGAAGATATTACTTCTTGAGGCTCTCGTTGGAAAGACTCTGAACCTGAAAACATTGGATGGAAGAGACCTTACAATTCAAGTGAAGGATATTGTTGAACCAGGCTACGAGCTGGTGGTCCCAAATGAAGGGATGCCCATTTCAAAGGAACCAGGAAAGAAGGGGAAACTAAGAATTAAGTTTGATGTTATGTTTCCTTCAAGGCTGACCGCACCACAAAAGTATGAACTGAAAATGATTCTGAGTGACGCTGATAACTAA 849 0.4311 MGAGDYYRILKVNRNATDEELKKAYKRLAMKWHPDKNHQQSVKKEDAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSSRVDRKDRTNEETGSQKDKKVGAIEAKLAFSLEELYKGCKRKMKVSRNVPDEFGKLYTVEETLKIDIKPGWKKGTKITFPEKGHQEPGCAPADLIFVVDEKAHALFKRDGNDLVIIQKILLLEALVGKTLNLKTLDGRDLTIQVKDIVEPGYELVVPNEGMPISKEPGKKGKLRIKFDVMFPSRLTAPQKYELKMILSDADN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0578 282 Gene3D - 183 263 - -
Lele56g0578 282 SUPERFAMILY Chaperone J-domain 4 78 IPR036869 -
Lele56g0578 282 SUPERFAMILY HSP40/DnaJ peptide-binding domain 105 183 IPR008971 GO:0006457|GO:0051082
Lele56g0578 282 SMART dnaj_3 4 66 IPR001623 -
Lele56g0578 282 FunFam Dnaj homolog subfamily b member 99 181 - -
Lele56g0578 282 Gene3D DnaJ domain 2 99 IPR036869 -
Lele56g0578 282 FunFam DNAJ heat shock family protein 182 277 - -
Lele56g0578 282 Pfam DnaJ C terminal domain 104 262 IPR002939 -
Lele56g0578 282 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Lele56g0578 282 SUPERFAMILY HSP40/DnaJ peptide-binding domain 186 270 IPR008971 GO:0006457|GO:0051082
Lele56g0578 282 Pfam DnaJ domain 5 71 IPR001623 -
Lele56g0578 282 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lele56g0578 282 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 277 - -
Lele56g0578 282 CDD DnaJ_C 104 265 - -
Lele56g0578 282 CDD DnaJ 5 63 IPR001623 -
Lele56g0578 282 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lele56g0578 282 PRINTS DnaJ domain signature 25 40 IPR001623 -
Lele56g0578 282 PRINTS DnaJ domain signature 7 25 IPR001623 -
Lele56g0578 282 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lele56g0578 282 Gene3D - 102 182 - -
Lele56g0578 282 FunFam DnaJ-like subfamily B member 13 2 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0578 Lele-ChrLele56 4231330 4233188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0578 6 73 C2H2 Transcription Factor Family AT1G74250 36.232 9.58e-10 57.4