Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0561 ATGAACGGCGGTGCGGGTCTTGGGGAGTTCGGAGCCGGGTTGGGCTTGAGTAGGCCGCAGTTGGGACAAAATTTGGGGCAGTTTGGCGATTTTACGTCCGGTCCGAACTCGAATGGCCCGGGTAATGATCCGAACTGTTCGGGACTGGGAGTGAATGGTGTCAATATGAAGAAGCGCGATTCTGAGGATGAATTTGCGAAAGGCATCTCCACCGCCAATAACGGTGGCATTGGCAATAGCAATGGCGTGAATGACGGTGATGGAAAACGGCTTAAAGTATCAGGGAATAGGAAGGAGAGCCATGAAACTAAAGCTGAAACAGAAACCAGTTCAGAAATGCCAGCTTCTGAGCCTCCTAAACCAGCTTACATCCATGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGCTGGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATAAACTACATCCAGTCACTACAGCGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAGGCTGTAAATTCAAGAGACCCTGGTATTGAAATTTTTCCTCCTAAAGATGTGAGTCTTCTACAACGCCTTTGGACTCTACATTGA 615 0.4748 MNGGAGLGEFGAGLGLSRPQLGQNLGQFGDFTSGPNSNGPGNDPNCSGLGVNGVNMKKRDSEDEFAKGISTANNGGIGNSNGVNDGDGKRLKVSGNRKESHETKAETETSSEMPASEPPKPAYIHARREKISERMKILQELVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRDPGIEIFPPKDVSLLQRLWTLH 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0561 204 MobiDBLite consensus disorder prediction 1 120 - -
Lele56g0561 204 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 194 IPR024097 GO:0006355
Lele56g0561 204 MobiDBLite consensus disorder prediction 90 108 - -
Lele56g0561 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 180 IPR036638 GO:0046983
Lele56g0561 204 Coils Coil 162 182 - -
Lele56g0561 204 MobiDBLite consensus disorder prediction 20 49 - -
Lele56g0561 204 Gene3D - 125 183 IPR036638 GO:0046983
Lele56g0561 204 Pfam Helix-loop-helix DNA-binding domain 127 166 IPR011598 GO:0046983
Lele56g0561 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 165 IPR011598 GO:0046983
Lele56g0561 204 SMART finulus 121 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0561 Lele-ChrLele56 4131741 4133037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0561 12 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 48.826 9.82e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0561 HLH 4.4e-05 No_clan