Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0556 ATGCCGTCTCACACGGATCTGGACCGTCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAGGCAGAGGTGAAGACTCTGTGCGATCAGGCGAGGGCGATACTGGTGGAGGAATGGAACGTGCAGCCTGTGAAATGCCCCGTGACGGTATGTGGTGATATACACGGGCAGTTCTACGATCTCATCGAGCTGTTCCGGATAGGAGGGAATGCTCCGGATACCAATTACCTATTTATGGGGGATTATGTTGATCGTGGTTACTATTCAGTGGAGACTGTTACACTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATTCTCAGAGGAAATCATGAGAGCCGTCAAATTACCCAAGTGTATGGATTTTATGATGAATGTTTAAGAAAATATGGAAATGCTAATGTCTGGAAGTATTTTACCGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTTTCACCTTCTTTGGATACACTGGATAACATCCGGGCCTTGGATCGCATACAAGAGGTTCCTCACGAAGGACCAATGTGTGATCTCTTGTGGTCCGATCCAGATGACCGTTGTGGATGGGGAATATCTCCTCGTGGTGCTGGATATACATTTGGACAGGATATAGCAGCTCAATTTAATCATACCAATGGTCTCTCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGTTACAATTGGTGCCAGGACAAGAATGTCGTGACTGTATTTAGTGCTCCAAATTACTGTTACCGGTGTGGAAATATGGCGGCAATACTGGAAATTGGAGAGGACATGGATCAGAATTTTCTGCAGTTTGACCCGGCTCCCCGACAAATTGAGCCCGACACTACACGGAAGACACCGGATTATTTTTTAGAAGAGGAGTTTCCCTGTTCAGTGGGTGGGTTATCATCAACATATTCTTTCTTTTGGAGTTTGCCAGCTACTGCTGCTGCCTTTTTTGCAGCAGAAACCCATAGAAGAACTGACGGCCATCAATTAATATCTGACAATCATGTTGATTTGGGACTTCCCATTGTGCCAATGCCAAATGAAAGTGCAGGACATCCCATCACTTTGCTAGCTAATATTTGCCAGGAAATAAAATTCAATGTGGCATACTGTTTTGCTTTCCGATCTACTCAGTTTTATACAATTCCATAG 1206 0.4453 MPSHTDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGEDMDQNFLQFDPAPRQIEPDTTRKTPDYFLEEEFPCSVGGLSSTYSFFWSLPATAAAFFAAETHRRTDGHQLISDNHVDLGLPIVPMPNESAGHPITLLANICQEIKFNVAYCFAFRSTQFYTIP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0556 401 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Lele56g0556 401 CDD MPP_PP2A_PP4_PP6 6 290 - -
Lele56g0556 401 Gene3D - 2 306 IPR029052 -
Lele56g0556 401 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Lele56g0556 401 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Lele56g0556 401 SMART pp2a_7 20 290 IPR006186 GO:0016787
Lele56g0556 401 FunFam Serine/threonine-protein phosphatase 1 306 - -
Lele56g0556 401 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 4 306 - -
Lele56g0556 401 SUPERFAMILY Metallo-dependent phosphatases 5 293 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0556 Lele-ChrLele56 4093890 4098455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0556 49 225 Calmodulin-binding Proteins AT5G63870 36.449 7.63e-29 112