Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0549 ATGCAAAATTTGCATTTGTTCTCTTGTTCAGGATTTGGCTCTTCGAAGGATTTTGAATTTTATCCGAGTTGGATGCATGATTTGGTGTTGAAGAGGGCTGAGGCGAGATCGGGGCAGCCACAGATGATGACTGGAGGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAAGGAAAAATATGACGAGTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTCAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGACGAAGCTATAAATTTTGTCAACAAAATTAAGGGTGATGACCATGTCTACAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCAGCCAGATCTTCTTGATGAATTTACTCACTTTCTTCCCGATACTTCAGCAACAGCATCTACACATTATGCTCCTTCTCGGAACTCTATACCTAGGAGCTCTGCAGTGCCAAGGCAAATGAGTGTTGAAAAGAGAGAACGGACTGTGGATTCTCATGGTGATCATGACCTGAGTGTTGATTATTCTGATCCAGATCATGACAGAGTTATGATTAAGACAGAAAAGGATCAGAGGAGGCGTGCTGAGAAGGAAAAGGACCTCAGAGAAGAGAGGGATAGGAGAGATAGGGAACGGGATGATAGAAATTATGGGCCTGATGGTAGCCAAGACTTTCCCAGGCCACGCTTCCCCCACATACGGAAATCTGGTCGTAGGACAGATGACACTGATGCTGAACCATTGCATCCAGGTGGCGATTCTGATGAAAATTTGAGCATGCGCCCTATGTCATCCACCTGTGATGACAAAAGTACTGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTTTGTGAAAAAGTCAAGGAGAAGTTACGAAATTGTGATGTTTATCAGGAATTTTTGAAGTGTCTGCATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAAGGGTTTAATGAATTTTTGTCCAGATAGTCCTTTTGGAATGAAGGGATTGCATCTAAACCAGCAAAGGTAGAGGACAAGGATAGAGATAGAGCTCAAGATCATGATAGGGATGATCGGGTTAAAGAAAGAGATCGTGAACTCCGAGAAAGGGACACATCTGCTTTTATTAGCAAGGATGTTTCAGGTCCTAAGATGTATCCATATTCCAGCAAGGATAAGTATTACGGAAAACCTATAAATGAGCTAGACCTTTCTAACTGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATTATTAAAGCAGATAGCCCTATTCGTATTGAGGACCACTTGACAGCACTAAATCGAAGGTGCATTGAACGATTATATGGTGATCATGCACTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTTATATTAAGCCGTTTGAAGCTGAAACAAGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGTTTGAGCACAAAAGCCTTGCTGGCTGAAATAAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTTGAGTATCCAGACCCAGATATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCATTGCTTGGTGTTCCTTTTCGACCCCAGGGTGCTGAAGATAAAGAAGATGTCGTCAAGGCCAAGCATATTTCTGTCAAGGGTGGCACTGCAAGTTCTGGTGGCAGTGATGGTAGTCCTGGTGTAGCTGCAAATGTAACGAATTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTTCATTAGAACAGTCAAATTCCAAGGCTGAAACTTTGGATTATAGTAACCATCACGAGGGTTCGCATACGAATTCATCCATGCCTGATGAGGTATTGGTGGCCAGTAAACAAGGTCATTCCAATGAACGGTTAGTGAATGCTAATGCCTTAATGGCTTCTGGAATGGAACAAATTAATGGGAGAACAAACATAGATAATGCATCAGGGCTTAGTGCTACTCCATCAAGACTTGGTAATGTTGCTACTGAGGGAGGAAATTTTCCTTCGTCAGAGGTTGGTGATTCGCCAAGACCAGCTACACCTACAAATGGGGCCATCACAGAAGGCAACAAAGTTCACAGATACCAAGAAGAACCTACTGGACACTTCAAAAGTGAAAGAGAAGAGGGCGAACTATCTCCAAATGGAGATTTTGAGGATAATTTTGCAGTATATGGAGATACTAGTTTAACAGCAGTAGGGCATAAAGGAAAGAAAGGTGGTGTGAGTATGCAATACCAAAATAGACGTGAAGAAGTTTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGAGAAGGAAGTCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCGGGAAGTGAGTCTGCCGATGGTGAGGAGTGTTATCAAGAAGAGCATGAGGAGGATGAGGAGCATGATAACAAGGTTGAGAGTGAGGGTGAAGCTGAAGGAATGGCTGATGCCAATGATTTGGAAGGCGATGTAATCTCATTGCCATTTTCGGAACGCTTTTTGCTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTATGTTGCACGAGAAAGAAAGGGTTTCGAGAGTTTTTTATGGAAATGATTCATTTTATGTGCTTTTTAGGCTTCACCGAGTAAGGACACTGTATGAGAGGATACAATCAGCAAAGTTGAACTCATCATCTGCGGATAGGAAGTGGAGAGCTTCAAATTATGTAAACTCTAATGATCAATATGGCAGATTCATGACTGCCCTTTACAACCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATATGTGTTATTTACATTAGACAAGTTGATATATAAGCTTGTTAAGCAGCTGCAAGCAATTGCTACTGATGAGATGGATAACAAGCTTCTCCAACTTCATTCATACGAGAAATCAAGAAAATCTGGAAGATTTTTTGATATAGTTTATTATGAAAATGCTCGAGTTCTTCTACATGATGAGATCATATACCGTATTGAATGTTCATCTACACCAACACGATTATCTATTCAATTGATGGACTATGGACATGATAAGCCTGAGGCAACTGCTGTGTCTATGGACCCTAACTTTTCAGCCTATTTGCACAATGACTTCCTTTCTGATTTTCCTGAAAAAAAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGCAAGTATGCCTGTGGTGATGAACTTTCAAACCAGGCCATGGAAGGATTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGATACAGAGGACTTTTTATTTCGAATGAGAAGGAAAAGGAAAGCTTTGCTTCAGAACAGATTATGTCATGAACGGACGAATTCTAAAAACGTTTTGACTTGTGCGAGCAACATTGACAGTGACCCCAGGAAAGAAGTGAATCACGTTGCAATGAGCAGAACAAGTCATACTTCTTCTGAGCTTGTGTTTGTTGAACACTCACATTTCCACACCAGCAGCAGCAAAAGTTAA 4161 0.4021 MQNLHLFSCSGFGSSKDFEFYPSWMHDLVLKRAEARSGQPQMMTGGAQKLTTNDALAYLKAVKEIFQDKKEKYDEFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFDEAINFVNKIKGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDQPDLLDEFTHFLPDTSATASTHYAPSRNSIPRSSAVPRQMSVEKRERTVDSHGDHDLSVDYSDPDHDRVMIKTEKDQRRRAEKEKDLREERDRRDRERDDRNYGPDGSQDFPRPRFPHIRKSGRRTDDTDAEPLHPGGDSDENLSMRPMSSTCDDKSTVKSMYSQEFAFCEKVKEKLRNCDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSRXSFWNEGIASKPAKVEDKDRDRAQDHDRDDRVKERDRELRERDTSAFISKDVSGPKMYPYSSKDKYYGKPINELDLSNXSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKADSPIRIEDHLTALNRRCIERLYGDHALDVMEVLRKNAPLALPVILSRLKLKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPLLGVPFRPQGAEDKEDVVKAKHISVKGGTASSGGSDGSPGVAANVTNSRQLNTSGNGDESISLEQSNSKAETLDYSNHHEGSHTNSSMPDEVLVASKQGHSNERLVNANALMASGMEQINGRTNIDNASGLSATPSRLGNVATEGGNFPSSEVGDSPRPATPTNGAITEGNKVHRYQEEPTGHFKSEREEGELSPNGDFEDNFAVYGDTSLTAVGHKGKKGGVSMQYQNRREEVCGEAAGENDADVDEGEGSPHRSSQDSENASENGHVSGSESADGEECYQEEHEEDEEHDNKVESEGEAEGMADANDLEGDVISLPFSERFLLSVKPLAKHVPPMLHEKERVSRVFYGNDSFYVLFRLHRVRTLYERIQSAKLNSSSADRKWRASNYVNSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAIATDEMDNKLLQLHSYEKSRKSGRFFDIVYYENARVLLHDEIIYRIECSSTPTRLSIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSDFPEKKKSGIFLKRNKRKYACGDELSNQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRRKRKALLQNRLCHERTNSKNVLTCASNIDSDPRKEVNHVAMSRTSHTSSELVFVEHSHFHTSSSKS 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0549 1386 MobiDBLite consensus disorder prediction 749 793 - -
Lele56g0549 1386 MobiDBLite consensus disorder prediction 203 341 - -
Lele56g0549 1386 PANTHER SIN3B-RELATED 48 1215 IPR039774 GO:0003714
Lele56g0549 1386 SMART hdac_interact2seq4b 461 550 IPR013194 -
Lele56g0549 1386 Pfam Sin3 family co-repressor 491 543 IPR013194 -
Lele56g0549 1386 SUPERFAMILY PAH2 domain 132 199 IPR036600 GO:0006355
Lele56g0549 1386 MobiDBLite consensus disorder prediction 952 1030 - -
Lele56g0549 1386 Coils Coil 256 285 - -
Lele56g0549 1386 Coils Coil 523 543 - -
Lele56g0549 1386 MobiDBLite consensus disorder prediction 977 992 - -
Lele56g0549 1386 Gene3D Paired amphipathic helix 132 201 IPR036600 GO:0006355
Lele56g0549 1386 Pfam C-terminal domain of Sin3a protein 1069 1316 IPR031693 -
Lele56g0549 1386 Gene3D Paired amphipathic helix 54 116 IPR036600 GO:0006355
Lele56g0549 1386 FunFam Paired amphipathic helix protein SIN3 342 414 - -
Lele56g0549 1386 Pfam Paired amphipathic helix repeat 366 410 IPR003822 GO:0006355
Lele56g0549 1386 Pfam Paired amphipathic helix repeat 153 197 IPR003822 GO:0006355
Lele56g0549 1386 Pfam Paired amphipathic helix repeat 71 115 IPR003822 GO:0006355
Lele56g0549 1386 MobiDBLite consensus disorder prediction 847 891 - -
Lele56g0549 1386 SUPERFAMILY PAH2 domain 345 411 IPR036600 GO:0006355
Lele56g0549 1386 MobiDBLite consensus disorder prediction 893 916 - -
Lele56g0549 1386 MobiDBLite consensus disorder prediction 298 322 - -
Lele56g0549 1386 FunFam Paired amphipathic helix SIN3-like protein 133 200 - -
Lele56g0549 1386 ProSiteProfiles PAH domain profile. 48 118 IPR003822 GO:0006355
Lele56g0549 1386 Gene3D Paired amphipathic helix 342 412 IPR036600 GO:0006355
Lele56g0549 1386 MobiDBLite consensus disorder prediction 427 448 - -
Lele56g0549 1386 MobiDBLite consensus disorder prediction 747 821 - -
Lele56g0549 1386 MobiDBLite consensus disorder prediction 203 221 - -
Lele56g0549 1386 MobiDBLite consensus disorder prediction 847 924 - -
Lele56g0549 1386 FunFam Paired amphipathic helix protein Sin3 54 116 - -
Lele56g0549 1386 ProSiteProfiles PAH domain profile. 344 413 IPR003822 GO:0006355
Lele56g0549 1386 MobiDBLite consensus disorder prediction 998 1016 - -
Lele56g0549 1386 ProSiteProfiles PAH domain profile. 134 200 IPR003822 GO:0006355
Lele56g0549 1386 SUPERFAMILY PAH2 domain 48 117 IPR036600 GO:0006355
Lele56g0549 1386 MobiDBLite consensus disorder prediction 224 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0549 Lele-ChrLele56 4038049 4047004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0549 9 150 WRKY Transcription Factor Family AT4G12020 46.479 2.53e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele56g0549 Sin3a_C 6.9e-55 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0905 53 18711309 18723602 Lele56g0549 56 4038049 4047004 hybridization
Lele54g0892 54 15448734 15457685 Lele56g0549 56 4038049 4047004 hybridization