Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0537 ATGGAAAGAGAATATGGCTCTGATATTTCTCCGTCATGGGAAAATGGTGAAAACGGCCATTCTTCTATGGAGAAGAGGCTAAGGTTATTTGGGTTTGACCTGAACCCATCTCAGATCAACGAGGTCTGTGTCAAAGACTCTGTGGAAGGAGATGAAAGTATGAACTCTTCAAACTCAGTTTCATCAGGAGGCGAGAAAACTGAACAACAGGGGAAGAGTTCATCTGCAACAAGAGACAACAACACGTCATCAGATCATGAGAGGAAGCTCGAGTGCCAATATTGTTCAAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAGGGCTAGCTTAAGCTATTATCTTCAGCCTTTTCATAACAACCCTGGTTTTTCCTTCGACGGCTCTAATACTCCTTGGTTCTTTGATCCCTTTTCTTATAATAAATCTGAGTTTTCTTTGGATGAAGAACCTCAGATTAGCTTCAAAACCAATGATCAAGATGCCATTAATATTCTTAATGGTTTTGATCAGAAATCAAATTGGAATTCTCATCCATCCCTTTCTCTTCGTTCTCAACAAGATACTTGTATGTTCACTTTATCACATACAGACCATAGGCCCTTCATCTTCCCTGCAGCTTCAAACCAGAGACATAGTAATAAGGGTTTGGATCTTCAACTAGGCCTCACTTTGCAGTCAAATACACATAAACATAATACCATGGATCTTTGCTTTGCGGATGTTAAGTTACTGAAGGTAAATTGTGGTGCCTTGAAAGTTGAAACGCAAGAATTGGAATAA 843 0.3998 MEREYGSDISPSWENGENGHSSMEKRLRLFGFDLNPSQINEVCVKDSVEGDESMNSSNSVSSGGEKTEQQGKSSSATRDNNTSSDHERKLECQYCSKEFANSQALGGHQNAHKKERMKKKRLQLQARRASLSYYLQPFHNNPGFSFDGSNTPWFFDPFSYNKSEFSLDEEPQISFKTNDQDAINILNGFDQKSNWNSHPSLSLRSQQDTCMFTLSHTDHRPFIFPAASNQRHSNKGLDLQLGLTLQSNTHKHNTMDLCFADVKLLKVNCGALKVETQELE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0537 280 Gene3D Classic Zinc Finger 64 137 - -
Lele56g0537 280 SUPERFAMILY beta-beta-alpha zinc fingers 87 117 IPR036236 -
Lele56g0537 280 MobiDBLite consensus disorder prediction 50 80 - -
Lele56g0537 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Lele56g0537 280 MobiDBLite consensus disorder prediction 43 86 - -
Lele56g0537 280 MobiDBLite consensus disorder prediction 1 21 - -
Lele56g0537 280 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lele56g0537 280 Pfam C2H2-type zinc finger 91 115 - -
Lele56g0537 280 PANTHER ZINC FINGER PROTEIN 5 19 246 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0537 Lele-ChrLele56 3918298 3919498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0537 74 145 C2H2 Transcription Factor Family AT1G67030 54.167 5.81e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele56g0537 zf-C2H2_6 2.3e-05 CL0361