Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0517 ATGTCTTCTTGGGTTCACTCTCAAATTCTGCAGAATAATGGTGAAATGGCTGGGCAGCCTATTCTTTCTCCATCTCCTCCTCCTCCTCCTCCATTGCCTTATATTTCTAACTTTCAGAAGCAAATATGCCCACCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCAGTTCTTTTCATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCTGGTCTCATTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAATAGATACCCAGATATGTCTGAATCAGATACTTACCAGAGGCAATTACAGCAACTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTTATAGATGCTCTTCCTGTCTTCTTTTATAAGGAGATAATTGGCTTGAAAGAGCCATTTGATTGTGCCGTTTGCCTCTGTGAATTCTCAGATCTTGACAAGTTGAGGTTGCTGCCTATGTGCAACCATGCTTTTCACATTGACTGCATAGACACATGGTTGCTGACTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATGCACCAGGATTTCCTTTTGAAAACCCAGTTTTAGACTTTGAAGAGCCAAGAAGGGAAGATGATGGGGTTTCAGCAGGCACTGTTGTAGCTGATTCTGCTTCTGTTCACAAACATGCAGAGAATCACATTATGAGTGGAAGAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAGCTCAAATACAAGACAAGAAGTAGAAAAATGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATTTGGATGCAAGGAGATGTTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCTAATAGGGGTGATGTGAGTAGTAGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGGAATACTCCTTCTACTGATTCTGACTTTGAGGGCAAAAAACTCAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTAACCCATATGGGAAATTCTACTAATGTCACTGCAAATTCGCCTTGGATGAATAGAACTAGAGAATCAGAACCTGTTCTGCTCTTTCTTTATCACATGTATTTCCGGGAAAGATATATGCTTTGCAGAAACTATAAGCAAAAAAGAGAAAAAGGAAAAGTCATGGAGTGTAGTTTTGCACTAGATGATTTTTGA 1275 0.3969 MSSWVHSQILQNNGEMAGQPILSPSPPPPPPLPYISNFQKQICPPPVSSSGNKISPAVLFIIVVLAIVFFISGLIHLLVRFLIKHRSSSSISQSNRYPDMSESDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDLDKLRLLPMCNHAFHIDCIDTWLLTNSTCPLCRGTLYAPGFPFENPVLDFEEPRREDDGVSAGTVVADSASVHKHAENHIMSGRRVFSVRLGKFRSSNTRQEVEKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSSSMRQLKVRVAQIGNTPSTDSDFEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSVTHMGNSTNVTANSPWMNRTRESEPVLLFLYHMYFRERYMLCRNYKQKREKGKVMECSFALDDF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0517 424 CDD RING-H2_PA-TM-RING 145 188 - -
Lele56g0517 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 193 IPR013083 -
Lele56g0517 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 348 - -
Lele56g0517 424 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Lele56g0517 424 SUPERFAMILY RING/U-box 125 194 - -
Lele56g0517 424 Pfam Ring finger domain 145 188 IPR001841 -
Lele56g0517 424 FunFam RING-H2 finger protein ATL46 108 193 - -
Lele56g0517 424 SMART ring_2 146 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0517 Lele-ChrLele56 3782881 3784437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0517 47 361 C3H Transcription Factor Family AT2G18650 40.401 1.28e-56 190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1067 49 6891500 6903570 Lele56g0517 56 3782881 3784437 CCT
Lele50g1155 50 7756382 7775005 Lele56g0517 56 3782881 3784437 CCT
Lele51g1081 51 6986263 6998566 Lele56g0517 56 3782881 3784437 CCT
Lele55g0530 55 3421353 3424640 Lele56g0517 56 3782881 3784437 ECH
Lele56g0517 56 3782881 3784437 Lele56g0517 56 3782881 3784437 ECH
Lele53g0943 53 19049987 19051536 Lele56g0517 56 3782881 3784437 hybridization
Lele54g0924 54 15701206 15702746 Lele56g0517 56 3782881 3784437 hybridization