Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0505 ATGAATTCAAACCCGTTGACCATATGGCCGATTAATTGGCAATTGGATCCACAACAACCTGAGGGACAAATGGCTTCATCGATGAGGATCTCAAGGCTGCTCTCTCGCTCTTTTGCTTCTTCTTCTTTGTTTGCCCGTGGAGGTGGGAATGGTTCCTTGCGCAGAGGGCTGAGTAAATACAGTACGGGTTCTGCTGCGGCTCTTGAAGAGCCGATTAAGCCGTCGATTCAAGTGGAACACACTCGGCTCCTAATCGGTGGGAAATTCGTGGATGCTGCTTCCGGCAAAACTTTTCCAACGTTGGACCCCAGGACAGGGGAAGTAATTGCCCATGTTGCTGAAGGTGACTCTGAAGATGTAGATCGAGCAGTTGTAGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCTAAAATGACAGCCTATGAAAGACAAAAGATATTATTACGTGCAGCTGATCTTATTGAGAAGCATAACGATGAGCTGGCGACACTAGAGACCTGGGATAACGGGAAGCCATATGCCCAAGCTGCTCAGATTGAAGTTCCAATGCTGGTTCGTCTAATTCGATACTATGCTGGTTGGACTGATAAGATTCATGGCCTCACGGTTCCTGCTGATGGACCACATCATGTGCAAACATTGCATGAACCAATTGGTGTTGCCGGTCAGATCATTCCCTGGAACTTCCCTCTTCTCATGTTTGCATGGAAGGTTGGGCCTGCGTTGGCATGTGGTAACACTGTCGTTTTGAAAACAGCTGAACAAACGCCATTGTCTGCCTTATATGCAGCAAAGCTATTCCATGAGGCTGGGCTTCCTTCTGGTGTTTTAAATATTATATCTGGCTTTGGTCCAACTGCTGGTGCTGCTGTTGCTAGTCACATGGATATTGACAAGGTTGCTTTTACTGGATCAACTGATACTGGAAAAATCGTCCTTGAACTGGCAGCAAAAAGTAATCTCAAGACTGTAACTTTGGAACTTGGAGGGAAATCCCCCTTCATTGTATGTGAAGATGCTGATGTAGATCTAGCTGCAGAGCTAGCACACTTTGCATTATTTTTTAATCAGGGACAATGCTGCTGTGCTGGTTCTCGTACATTTGTACATGAAAGTATATATGATGAATTCGTTGAAAAAGCAAAGGCAAGTGCCTTGAAACGTGCTGTTGGGGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCTGAACAATTTGAGAAGATACTGAAGTATATAAGGTCTGGGGTTGAAAGTGGAGCCACTCTAGAAACTGGAGGAGAGAGACTAGGAGAGAAAGGCTTCTATATCAAGCCCACTGTGTTTACAAATGTCCAGGACAATATGGCAATTGCGAAGGAAGAAATTTTTGGCCCTGTGCAATCCATTTTGAAATTCAAGGATATCGATGAAGTGATTAGAAGAGCAAACAATTCTCGCTATGGCCTTGCAGCCGGGGTGTTCACGAAAAACATCGCCACAGCAAACACTCTGACTAGAGCACTGCGAGTTGGGACCGTGTGGGTAAATTGCTTTGATACATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGTGGACAAGGCAGAGAAAAGGGGATTTACAGTCTTAAAAATTACTTGCAAGTGAAGGCTGTTGTTACTCCCTTAGAGAACCCAGCATGGCTTTGA 1686 0.4531 MNSNPLTIWPINWQLDPQQPEGQMASSMRISRLLSRSFASSSLFARGGGNGSLRRGLSKYSTGSAAALEEPIKPSIQVEHTRLLIGGKFVDAASGKTFPTLDPRTGEVIAHVAEGDSEDVDRAVVAARKAFDEGPWPKMTAYERQKILLRAADLIEKHNDELATLETWDNGKPYAQAAQIEVPMLVRLIRYYAGWTDKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYAAKLFHEAGLPSGVLNIISGFGPTAGAAVASHMDIDKVAFTGSTDTGKIVLELAAKSNLKTVTLELGGKSPFIVCEDADVDLAAELAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKASALKRAVGDPFKGGIEQGPQIDSEQFEKILKYIRSGVESGATLETGGERLGEKGFYIKPTVFTNVQDNMAIAKEEIFGPVQSILKFKDIDEVIRRANNSRYGLAAGVFTKNIATANTLTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGIYSLKNYLQVKAVVTPLENPAWL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0505 561 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 327 334 IPR029510 GO:0016491
Lele56g0505 561 CDD ALDH_F2BC 78 553 - -
Lele56g0505 561 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 95 551 IPR016162 GO:0016491
Lele56g0505 561 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 67 551 - -
Lele56g0505 561 SUPERFAMILY ALDH-like 76 555 IPR016161 GO:0016491
Lele56g0505 561 FunFam Mitochondrial aldehyde dehydrogenase 2 333 522 - -
Lele56g0505 561 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 355 366 IPR016160 GO:0016491
Lele56g0505 561 FunFam Aldehyde dehydrogenase, putative 523 549 - -
Lele56g0505 561 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 333 522 IPR016163 GO:0016620
Lele56g0505 561 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 85 348 - -
Lele56g0505 561 Pfam Aldehyde dehydrogenase family 89 551 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0505 Lele-ChrLele56 3692020 3697252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0505 26 561 Aldehyde Dehydrogenase Gene Family AT3G48000 75.419 0.0 866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1104 52 7496288 7503979 Lele56g0505 56 3692020 3697252 CCT
Lele49g1058 49 6809220 6811304 Lele56g0505 56 3692020 3697252 CCT
Lele50g1144 50 7640059 7641597 Lele56g0505 56 3692020 3697252 CCT
Lele51g1070 51 6905409 6907493 Lele56g0505 56 3692020 3697252 CCT
Lele55g0519 55 3314740 3318743 Lele56g0505 56 3692020 3697252 ECH
Lele56g0505 56 3692020 3697252 Lele56g0505 56 3692020 3697252 ECH
Lele53g0954 53 19154958 19158988 Lele56g0505 56 3692020 3697252 hybridization
Lele54g0934 54 15783285 15789403 Lele56g0505 56 3692020 3697252 hybridization