Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0500 ATGAAAGGAGGAGAAGGGAAAGAGTACAAGAAGGGACTGTGGACGGAGGAAGAAGACAGGGTTTTGATGGACTACATTAGGGTTCATGGAAGACGCCACTGGAACCGCATCTCCAAGGTCACTGGTTTGATGAGGACTGGGAAGAGCTGCAGATTAAGGTGGCTGAACTATCTGAGCCCAAACGTGAAACATGGAAGCTTCTCTGAGGAAGAAGACGATCTCATCATTCGACTTCATAATCTTCTCGGAAACAGGTGGTCTCTAATAGCAGGGAGGGTACCTGGAAGAACAGACAATCAAGTAAAGAATCATTGGAACGCTCATTTGTGCAAAAAACTTGGTATCACTAAGCAAACAATAAAACGTATCAAGGTCAAGACATGTTCAGAACCTAGGGTTTTACAATCAGAAGAGACTCAGAATGTTCACACGTCTCCGAATTCTACGCCAATTGTTCCGCTTACTCTGAACAGTAAAGCCGAAGAAGCTGAGATACACGGCCAAAGAAGCTATGCCAACAACAATTCCATGGCAAATATTGGTGAAGCACAACATTCTTGGCCACCAACAGAAAATGATCACTTTGACCAAACTTTTATGTTGGATGATGGTCATACTTTTGTTCTACATAGTCCTCCTAGGTTAATGGAATTCTTTGATGGATTCGATATAATGTAG 678 0.4277 MKGGEGKEYKKGLWTEEEDRVLMDYIRVHGRRHWNRISKVTGLMRTGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNAHLCKKLGITKQTIKRIKVKTCSEPRVLQSEETQNVHTSPNSTPIVPLTLNSKAEEAEIHGQRSYANNNSMANIGEAQHSWPPTENDHFDQTFMLDDGHTFVLHSPPRLMEFFDGFDIM 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0500 225 Gene3D - 5 64 - -
Lele56g0500 225 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lele56g0500 225 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Lele56g0500 225 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lele56g0500 225 CDD SANT 14 58 IPR001005 -
Lele56g0500 225 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Lele56g0500 225 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Lele56g0500 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 176 - -
Lele56g0500 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Lele56g0500 225 SMART sant 10 60 IPR001005 -
Lele56g0500 225 SMART sant 63 111 IPR001005 -
Lele56g0500 225 FunFam Myb transcription factor 11 63 - -
Lele56g0500 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Lele56g0500 225 CDD SANT 66 109 IPR001005 -
Lele56g0500 225 Gene3D - 65 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0500 Lele-ChrLele56 3645238 3648661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0500 2 222 MYB Transcription Factor Family AT5G40330 45.045 4.38e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele56g0500 Myb_DNA-binding 3.8e-14 CL0123