Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0486 ATGGCAGAGAAGGACCTTGATACTCTGAGGAGGAGGGTGGCCTCCATAGCCAACCATCTCGTTCCCTTTCACTCTTCGGAAAATGGGACAGTGAAATTGTGTAATACTTCCATGAAAGATAGCTACCATAAGGTTCATGGTGAAGTTCCTTCTCATGAAGTTTTTTGGAGGAGTATCGCTTCTGATGAATCAGGCAAGGAATATACTGACATTATATACGAGAAAGCTGAAGGAGAAGCCATAGCTAAGATCAGCATTAATAGGCCAGAGAGAAGGAATGCTTTCCGACCCCATACCATTAAGGAGCTTATTCGTGCTTTCAATGATGCCAGAGATGATAGCTCTGTTGGTGTCATCATTCTCACTGGGAAGGGAACCAAGGCATTCTGTAGTGGGGGTGACCAGGATTTGAGAACCAAAGATGGTTATGCTGACTTCGAAAGTGTTAGCCGCCTTAATGTGTTAGATTTGCAGGTGCAGATCCGTCGCCTTCCAAAACCAGTAATTGCTATGGTAGCAGGTTATGCTGTTGGAGGAGGACATATATTACATATGGTTTGTGATCTAACTATCGCAGCAGATAATGCTATATTTGGCCAAACTGGTCCTAAGGTAGGAAGCTTTGATGCTGGTTATGGAAGTTCCATCATGTCACGTCTGGTGGGGCCCAAAAAAGCACGTGAAATGTGGTTTCTCACGAGGTTTTATTCTGCTGATGAAGCAGATAAAATGGGACTTATAAACACTGTTGTACCTCTAGAGAACTTGGAGAAAGAGACAATAAAATGGTGTCGAGAGATTCTGAGGAACAGCCCAACTGCGATCCGAGTTCTCAAATCAGCTCTTAATGCCGTGGATGATGGCCACGCTGGACTTCAGGAGATTGGTGGAAATGCAACACTCATATTTTATGGAACTGAGGAAGCTAACGAGGGAAAGACAGCATTCATGCAACGTAGAGCCCCTGATTTTTCCAAGTTCCAAAGAAGACCTTGA 996 0.4418 MAEKDLDTLRRRVASIANHLVPFHSSENGTVKLCNTSMKDSYHKVHGEVPSHEVFWRSIASDESGKEYTDIIYEKAEGEAIAKISINRPERRNAFRPHTIKELIRAFNDARDDSSVGVIILTGKGTKAFCSGGDQDLRTKDGYADFESVSRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSADEADKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQEIGGNATLIFYGTEEANEGKTAFMQRRAPDFSKFQRRP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0486 331 Hamap 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 56 330 IPR010198 GO:0008935|GO:0009234
Lele56g0486 331 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 2 331 - -
Lele56g0486 331 FunFam 1,4-dihydroxy-2-naphthoyl-CoA synthase 269 319 - -
Lele56g0486 331 TIGRFAM menB: naphthoate synthase 68 327 IPR010198 GO:0008935|GO:0009234
Lele56g0486 331 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 169 189 IPR018376 GO:0003824
Lele56g0486 331 SUPERFAMILY ClpP/crotonase 66 326 IPR029045 -
Lele56g0486 331 FunFam 1,4-dihydroxy-2-naphthoyl-CoA synthase 51 268 - -
Lele56g0486 331 Gene3D - 60 268 - -
Lele56g0486 331 CDD crotonase-like 71 267 - -
Lele56g0486 331 Pfam Enoyl-CoA hydratase/isomerase 78 325 IPR001753 GO:0003824
Lele56g0486 331 Gene3D - 269 319 IPR014748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0486 Lele-ChrLele56 3586911 3590271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0486 5 331 Acyl Lipid Metabolism Gene Families AT1G60550 78.313 0.0 541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g0486 56 3586911 3590271 Lele49g0548 49 3310418 3312677 CCT
Lele56g0486 56 3586911 3590271 Lele50g0579 50 3521317 3523590 CCT
Lele56g0486 56 3586911 3590271 Lele51g0568 51 3399193 3401445 CCT
Lele56g0486 56 3586911 3590271 Lele52g0577 52 3606465 3608737 CCT
Lele53g0972 53 19264716 19267112 Lele56g0486 56 3586911 3590271 hybridization
Lele54g0951 54 15898992 15902440 Lele56g0486 56 3586911 3590271 hybridization