Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0472 ATGGAAGAGATCTACGGAACGCCTTTGTCGGCGGACTACTCTGACAAGGTCTTGATGACGCCGGAGAACCTCATATTCGCCGCTGATTGCCAGAGTTTTCTCCCGTCCTCCTCCGGCGGTTTCCACGATCGGAATCCTATGTTCGGATCCGACGACTTGCTGTCTGCCATTACCGAAGCTGAGCCGCCGTCTGTTGCCACTGAAATTCGACCTGAAGACGATGCCTCCTCTCTCATCAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGTCTCCTCCAAGCTTTCATCGATTGTCAGAAGGTAGGAGCGCCTCCAGAAATAGCGTGTCTGTTAGACGAAATCCAGCGAGAAAATGATGTTTGTGAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGATCTTCTGGTAAAGTATAAATCTGACCTTTCCGGGCCTTTTGACGAAGCAACTTCTTTCCTCAACGAGATCGAAATCCAGCTCAGTCATCTCTGCTCTGGTGCTTCTGTTCCAACTCTTTCAGATGATAGAGGCGTGTCTTCAGAAGAAGATATAAGCGCAGGAGATGGTGATGCACAAGCTGGGGGATTGCGTGGGGAAGATCGAGCGCTGAAGGATAGGCTCTTAAACAAGTTTGGGGGTCGGATTAGTAGTTTGAAACTGGAGTTCTCGAAGAAGAAGAAGAAGGGCAAGCTTCCCAAGGAAGCCAGGCAAACGCTTCTTGACTGGTGGAATGGCCACTACCAATGGCCTTACCCTACGGAAGCTGATAAGATAGCACTGGCAAAGTCAACGGGGCTACATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGGAAGCGCCACTGGAAACCGTCGGAGAATCTGCAGTTCTCGGTTACGGATACTCTAACCGGAGGCTTCTACTCCGATAATCATTTGGAAATGGCGTGCTTGGCCTCCATTGTTGCGCCGTTCCCGTCGTTCCGGCCCTTAGCTTCTCCCCGTTTAAGATTCAGCCCAGTTCGATGTGCCGCTGAACGCCAGGCCTTGTTTAATCGCATTGCTCCTGTCTATGATTACCTCAATGATTTGCTCAGCCTGGGTCAGCATCGCATTTGGAAGCGAATGGCGGTGTCTTGGAGTGGAGCGAAAATGGGAGACCGTGTATTGGATGCGTGCTGTGGAAGTGGGGATTTAACGTTTCTGTTGTCTGAGAAAGTTGGGTCCGATGGCGAGGTGACTGGTCTTGACTTCTCAAAGGAGCAATTGTTGATTGCTTCATCTCGGCAGAACATGTTTTCAAAGGAATACTTGAGTAATATTGAGTGGGTTGAAGGTGATGCTCTTAACTTGCCATTTTCTGATGGTTCATTTGATGCTATAACTATGGGTTATGGTCTACGAAATGTGGTTGATAGGCGCAAGGCGATGCAAGAATTATTACGAGTCCTAAAAGCTGGCACCAGAGCGTCTATCCTTGACTTTAATAAGAGCGATCAGTTTCTGACTGCTTCAGCTATGGAATGGATGATTGACAACGTTGTTGTCCCAGTGGCCTCTGGTCATGGCCTCTACGAAGAGTATAGATATCTAAAAAGCTCAATCAGAGAGTTTTTGACAGGGAAGGAATTGGAGGAACTTGCTTTAGAAGTTGGTTTTTCTACTGCACGACATTATGAGATCCATGGAGGCTTTATGGGCTGTCTGGTAGCAAAGCGTTAG 1743 0.4814 MEEIYGTPLSADYSDKVLMTPENLIFAADCQSFLPSSSGGFHDRNPMFGSDDLLSAITEAEPPSVATEIRPEDDASSLIKAKIASHPHYPRLLQAFIDCQKVGAPPEIACLLDEIQRENDVCEREVVSTCFGDDPELDEFMETYCDLLVKYKSDLSGPFDEATSFLNEIEIQLSHLCSGASVPTLSDDRGVSSEEDISAGDGDAQAGGLRGEDRALKDRLLNKFGGRISSLKLEFSKKKKKGKLPKEARQTLLDWWNGHYQWPYPTEADKIALAKSTGLHQKQINNWFINQRKRHWKPSENLQFSVTDTLTGGFYSDNHLEMACLASIVAPFPSFRPLASPRLRFSPVRCAAERQALFNRIAPVYDYLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDACCGSGDLTFLLSEKVGSDGEVTGLDFSKEQLLIASSRQNMFSKEYLSNIEWVEGDALNLPFSDGSFDAITMGYGLRNVVDRRKAMQELLRVLKAGTRASILDFNKSDQFLTASAMEWMIDNVVVPVASGHGLYEEYRYLKSSIREFLTGKELEELALEVGFSTARHYEIHGGFMGCLVAKR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0472 580 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Lele56g0472 580 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 353 580 IPR032904 GO:0042372|GO:0052624
Lele56g0472 580 CDD homeodomain 247 299 IPR001356 GO:0003677
Lele56g0472 580 SUPERFAMILY Homeodomain-like 236 309 IPR009057 -
Lele56g0472 580 Pfam ubiE/COQ5 methyltransferase family 355 573 IPR004033 GO:0008168
Lele56g0472 580 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 345 580 IPR004033 GO:0008168
Lele56g0472 580 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Lele56g0472 580 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Lele56g0472 580 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 304 - -
Lele56g0472 580 Gene3D - 234 305 - -
Lele56g0472 580 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Lele56g0472 580 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 349 580 IPR004033 GO:0008168
Lele56g0472 580 SMART ELK_2 215 236 IPR005539 GO:0003677
Lele56g0472 580 Gene3D Vaccinia Virus protein VP39 360 580 IPR029063 -
Lele56g0472 580 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Lele56g0472 580 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Lele56g0472 580 MobiDBLite consensus disorder prediction 186 209 - -
Lele56g0472 580 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Lele56g0472 580 CDD AdoMet_MTases 395 494 - -
Lele56g0472 580 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Lele56g0472 580 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 365 380 IPR023576 GO:0008168
Lele56g0472 580 TIGRFAM MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 356 579 IPR004033 GO:0008168
Lele56g0472 580 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 349 571 IPR029063 -
Lele56g0472 580 SMART HOX_1 237 302 IPR001356 GO:0003677
Lele56g0472 580 Pfam ELK domain 216 236 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0472 Lele-ChrLele56 3466774 3474864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0472 1 317 Homeobox Transcription Factor Family AT1G23380 64.438 2.08e-133 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele56g0472 Ubie_methyltran 5e-54 CL0063