Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0465 ATGGTCACTCTTAAATGCTCTGCAAAAATCAACACATGCAATGCCTCACTTTACCACATAAACCATGGTCTTGACATAGAAGAAATAGCCTCTCTTTATTCTGTTAATTCATCCCAAATCCGACCAATAAGAAGGGACACCAAGCATGACTACCTCGTAACTGTTCCTTGTTCTTGTAAAATTGTCACTAACCTTAGGGGATATTTATTTGACACAACACACAGAGTGGAGCCAAATGAGACTTATATGAATATTTCAAACTTCTTTTACAGTGGACAAGCCTGGTCTCATTCTGATAATAATCTGACCACAGTTCAGCAGAATGATACAACAGCAGAAATCGCTAATCTGCTTTCATCTACACTTACTGGCATTCAGACCATGAATGAAGTTTTAGCTAATAGGCCTTCATTCATCGACGTCGGTTGGGTTTATAGAAAAGCATCTGAATTTGCAGGAACTTCTGATGTTAATGCTTTTCATTCTGTTTTGGTTTTTCCCTGCCTGTTACCAGGAAAGAAACGCAAGCTTTCTATTATCATTGGTGTCTTAGTGGGTGTGGAGCAATTGGGATATGCCAGTGGAGAAGGCAACCTCTATTTGGTGTATGAGTATGTTTCAAGAGGATCTCTGAGTGACCATCTTCATGATCCATTCCTAAGAGGTCATGAACCTCTTTCATGGACTGCTAGAGCACAGATTGCTCTGGATGCTGCAAAAGGTCTTGAATACATACACGATCACACAAAAGCACGGCATGTGCACCGAGATATCAAGACTAGCAATATTCTTCTGGACAATAAACTGAGAGCCAAGACTAATAAAGTATTTGAAGCCGATGATCCAGAGAATGCTTTAGAGGATACTATAGACAAAAACCTTCGAGATAGCTATCCTGTGGAGGATGTCTTCAAGATGATAGAAATAGCAGAAAGATGCTTATGTGAAGAACCAGTAGAGAGGCCAGAAATGAGGGAGATTGTGGTGATATTGTCAGGGGCAGCCTCTGCTCTCTTCCTTCTTGACATCAAAGGCCGTGTTCTCATTTGGCGGGACTACCGGGGCGATGTCTCTGCCGTCGAGGCCGAGCGCTTCTTCACCAAGCTCATCGAAAAAGAGGGAGATCCGCAGTTTCAAGATCCAGTTGTATATGATAATGGTGTGACCTACATGTTTATACAGCATAGCAATGTCTACCTTATGATAGCAGCCAGGCAAAACTGCAATGCCGCTAGCCTTCTTTTCTTCCTACATCGTATAGTTGATGTGTTTAAGCACTATTTTGAAGAATTGGAAGAGGAATCACTAAGGGATAATTTTGTTGTTGTGTACGAACTCCTTGATGAAATTATGGACTTTGGCTACCCTCAGTATACTGAGGCAAAGATTCTAAGTGAATTTATCAAGACTGATGCTTATAGAATGGAAGTTACACAGAGACCTCCTATGGCTGTAACTAATGCTGTGTCTTGGCGTAGTGAAGGCATAAATTACAAGAAAAATGAGGTTTTCTTGGATGTGGTAGAGAGTGTTAACATACTTGTCAATAGCAATGGGCAAATAATTAGGTCTGATGTTGTTGGAGCACTGAAGATGAGAACAAATTTGAGTGGCATGCCTGAGTGTAAACTTGGCCTAAATGATAGAGTATTATTGGAGGCCCAAGGAAGGGCGACCAAGGGAAAGGCAATTGACTTGGAAGACATTAAATTTCATCAGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGAACAATTTCCTTCATACCACCAGATGGATCATTTGATTTGATGACATATAGGCTCAGCACACAGGTTAAGCCTTTAATTTGGGTGGAAGCTCAGGTTGAAAGGCATTCAAAAAGCCGGATTGAGATTATGGTAAAAGCTAGGAGTCAATTCAAGGAACGTAGCACTGCCACAAACGTTGAGATTGAGTTGCCTGTACCTGCTGATGCAACCAATCCAAATGTTCGAACTTCAATGGGATCTGCATCATATGCCCCTGAAAAGGATGCATTGATCTGGAAAATAAGATCCTTTCCTGGAGGCAAGGAGTACATGTTAAGGGCAGAGTTTCGTCTTCCCAGCATAACAGCTGAGGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAGATACCATATTTTACTGTTTCTGGGATACAGGTAAGATACCTGAAGATAATTGAGAAAAGTGGGTATCAGGCCCTTCCGTGGGTGAGATACATCACAATGGCTGGAGAGTACGAACTGAGGCTTATTTGA 2277 0.4159 MVTLKCSAKINTCNASLYHINHGLDIEEIASLYSVNSSQIRPIRRDTKHDYLVTVPCSCKIVTNLRGYLFDTTHRVEPNETYMNISNFFYSGQAWSHSDNNLTTVQQNDTTAEIANLLSSTLTGIQTMNEVLANRPSFIDVGWVYRKASEFAGTSDVNAFHSVLVFPCLLPGKKRKLSIIIGVLVGVEQLGYASGEGNLYLVYEYVSRGSLSDHLHDPFLRGHEPLSWTARAQIALDAAKGLEYIHDHTKARHVHRDIKTSNILLDNKLRAKTNKVFEADDPENALEDTIDKNLRDSYPVEDVFKMIEIAERCLCEEPVERPEMREIVVILSGAASALFLLDIKGRVLIWRDYRGDVSAVEAERFFTKLIEKEGDPQFQDPVVYDNGVTYMFIQHSNVYLMIAARQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTNLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSKSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0465 758 Gene3D Transferase(Phosphotransferase) domain 1 185 273 - -
Lele56g0465 758 CDD AP1_Mu_N 336 475 - -
Lele56g0465 758 Pfam Adaptor complexes medium subunit family 489 756 IPR028565 -
Lele56g0465 758 ProSiteProfiles Protein kinase domain profile. 59 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0465 758 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 489 509 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 ProSiteProfiles Mu homology domain (MHD) profile. 500 756 IPR028565 -
Lele56g0465 758 Pfam Clathrin adaptor complex small chain 337 460 IPR022775 -
Lele56g0465 758 SUPERFAMILY SNARE-like 336 471 IPR011012 -
Lele56g0465 758 PANTHER AP COMPLEX SUBUNIT MU 335 756 - -
Lele56g0465 758 Pfam Protein tyrosine and serine/threonine kinase 187 272 IPR001245 GO:0004672|GO:0006468
Lele56g0465 758 Gene3D Mu homology domain, subdomain B 608 756 - -
Lele56g0465 758 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 489 756 IPR036168 -
Lele56g0465 758 Gene3D - 337 475 - -
Lele56g0465 758 CDD AP-1_Mu1_Cterm 486 756 - -
Lele56g0465 758 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 586 600 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 SUPERFAMILY Protein kinase-like (PK-like) 188 332 IPR011009 -
Lele56g0465 758 Gene3D Mu homology domain, subdomain B 496 752 - -
Lele56g0465 758 SMART tyrkin_6 175 331 IPR020635 GO:0004713|GO:0006468
Lele56g0465 758 Gene3D Transferase(Phosphotransferase) domain 1 274 336 - -
Lele56g0465 758 FunFam AP-1 complex subunit mu-1 isoform 1 335 475 - -
Lele56g0465 758 PRINTS Clathrin coat assembly protein signature 491 519 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 PRINTS Clathrin coat assembly protein signature 675 686 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 PRINTS Clathrin coat assembly protein signature 433 460 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 PRINTS Clathrin coat assembly protein signature 566 593 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 PRINTS Clathrin coat assembly protein signature 345 365 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele56g0465 758 PRINTS Clathrin coat assembly protein signature 635 650 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0465 Lele-ChrLele56 3421401 3430012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0465 187 272 Receptor kinase-like Gene Family AT1G51940 65.116 4.38e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele56g0465 Adap_comp_sub 2.2e-91 CL0448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0998 53 19460799 19464637 Lele56g0465 56 3421401 3430012 hybridization
Lele54g0977 54 16063069 16067152 Lele56g0465 56 3421401 3430012 hybridization