Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0450 ATGGAAGAAGCACTCAGGAGGCTTAACGGGTTAGCCCCGATTCCTGAACCCGACCTACAGGGCTCCATCTCCGACCCCCCGAAGAAGTGCCCAGCCACCACCATCACCAAGAGGACGGCTAGAGAAAACGGTGGCACTATGAGGTACCGTGGCGTTCGGCGCAGGCCCTGGGGCCGTTACGCGGCGGAGATAAGAGACCCTCAGTCCAAGGAGCGACGGTGGCTCGGCACTTTCGACACGGCGGAGGAAGCTGCATGCGCCTATGACTGCGCTGCCCGAGCCATGCGTGGCCTCAAAGCTCGAACCAATTTCGTTTACCCGACTTCACCTCCTCCTTCTGCAACCACCGAGCATCTCTTCCCTCATTTCGCCTTCCCCAAACAATCTCACAATCAAATGAACAAGAACCTTAACCCTCATAACCGCCCTTTAGGCTGGCCTTCTTCTAGCTCTAACCCTCACGTCGCTGATTTTTCTTCTCCTACTGATTCTTCTCTAAACATGTTTATGTTTCGTGACTACCTTAACTCCGCTTCTAACCCATCTTTGGTTACTTCTGCTCAGCAACTTTACAACCCCGTAAACAATATCACATGTTCATGTTCTGGTTCCTCGTCTTCCACGCCTCCTTCTAATTCTGTCCCAGGTTTCTGTGTTGTGAATTCTGCTGGCGGCAATATGGAGGATGCCAAAATTACTGAAGCTGATGACGAATCTGAATTCTTTCCCAGAGAGCATTCGGATTCTGGATTGTTGGAAGAGATAGTCCATAGGTTCTTACCAAAATCATCAAAGCCCAACCAGCAGTCGGAGGTTCGAGTGAAAGAGGAGAATCTGCCTCTGTCAACACCACAGTTGCTTCCTCCTCAGCCAGTGTATAATGATCATGGCATGTTCACTTCCCCCACTTCTCTGTGCTATGAAAGTCTTAGGAATAAGGAGGTGACCAAGGCTGAGGATTATAATGTGTCTTATGATCCCCAAGGTTTCCCTATGCAGCAATTTGACAGCTTTAAGAATGGATACAGCACTGGACAAGGCTTGCCTCTCAGAAGCGACCACCTCCACTTGATGATGAACGAAGCAGGGTACTCCATCATGGGAGATATTTTCCAGTACCCAGAGCTTCTTAATGAATTGGTAGCTAGGATACAAAACGCTTAA 1164 0.4957 MEEALRRLNGLAPIPEPDLQGSISDPPKKCPATTITKRTARENGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPPSATTEHLFPHFAFPKQSHNQMNKNLNPHNRPLGWPSSSSNPHVADFSSPTDSSLNMFMFRDYLNSASNPSLVTSAQQLYNPVNNITCSCSGSSSSTPPSNSVPGFCVVNSAGGNMEDAKITEADDESEFFPREHSDSGLLEEIVHRFLPKSSKPNQQSEVRVKEENLPLSTPQLLPPQPVYNDHGMFTSPTSLCYESLRNKEVTKAEDYNVSYDPQGFPMQQFDSFKNGYSTGQGLPLRSDHLHLMMNEAGYSIMGDIFQYPELLNELVARIQNA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0450 387 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Lele56g0450 387 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Lele56g0450 387 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lele56g0450 387 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lele56g0450 387 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lele56g0450 387 MobiDBLite consensus disorder prediction 1 32 - -
Lele56g0450 387 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lele56g0450 387 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lele56g0450 387 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lele56g0450 387 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 38 210 - -
Lele56g0450 387 FunFam Ethylene-responsive transcription factor 2 47 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0450 Lele-ChrLele56 3341853 3343016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0450 1 262 AP2-EREBP Transcription Factor Family AT1G12980 39.852 1.26e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele56g0450 AP2 2.9e-12 CL0081