Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0436 ATGGTTTTGTTAGTGTGTGACATGCTAATTGATGGAAAGGGTACAAAAGGGAAGAAAAAAACTATAGGGGTTCGTAGGATAGGTGTTGATAATGTACAACGTCTTGTAGGAAAAGAGGGCATGCAGATTCAAAATGACTATAACTCGGAAGCATACAGGTTAAGAAGCAGCTTTTCTCGAGGAACTGTCTCGGAGACATACAGAAACTCGTTCTTAAAACCAAAATCAAAGGCAGAGATCAAATTACTCGCTGCTAAGAAACACAGTGAAGCAGAGAAGAGACGCAGGATGCGAATCAATGCTCAATATGCCACCCTCCGCACCATCCTCCCCAACTTGGTCAAAATGGACAAAGCATCGGTACTGGCGGAGACTGTAAGGCAATTAAAGGAGCTGAAGAAGAATATATCAGAATTGGAGGCAGCTAGTGCGAGTAGTTCAGGTGAGATCACTGTGTTTCCCAGTGCAAAAGACAAGTTGAACTTGGACCACTGTAAAGATAAGGAGGGCCTCATGAAGGCGACCTTGAGTTGTGAGGATAGGCCAGGGCTGATGTCAGCCATCACAAGGGCTCTTAGGTCTGTGAAAGCCGAGGTGGTAAAGGCTGAGATGGTGAATGTAGGAGGTAGAACCAGAAATGTGTTATGGGTTCAAGGCTTGCAAAATGGAAATGAAGGGATGGTTGTCCTCAAGAGGACTCTCAAGGTTGTCATGCATAAGCCAACTTTCAAATTGCATCATCTGACTCAGTAA 753 0.4449 MVLLVCDMLIDGKGTKGKKKTIGVRRIGVDNVQRLVGKEGMQIQNDYNSEAYRLRSSFSRGTVSETYRNSFLKPKSKAEIKLLAAKKHSEAEKRRRMRINAQYATLRTILPNLVKMDKASVLAETVRQLKELKKNISELEAASASSSGEITVFPSAKDKLNLDHCKDKEGLMKATLSCEDRPGLMSAITRALRSVKAEVVKAEMVNVGGRTRNVLWVQGLQNGNEGMVVLKRTLKVVMHKPTFKLHHLTQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0436 250 Coils Coil 122 149 - -
Lele56g0436 250 SUPERFAMILY ACT-like 174 221 IPR045865 -
Lele56g0436 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 150 IPR036638 GO:0046983
Lele56g0436 250 CDD ACT_UUR-ACR-like 175 222 - -
Lele56g0436 250 Gene3D - 172 246 - -
Lele56g0436 250 Pfam Helix-loop-helix DNA-binding domain 87 132 IPR011598 GO:0046983
Lele56g0436 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Lele56g0436 250 Gene3D - 83 142 IPR036638 GO:0046983
Lele56g0436 250 PANTHER TRANSCRIPTION FACTOR BHLH30 62 241 IPR045847 GO:0003700|GO:0006355
Lele56g0436 250 SMART finulus 89 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0436 Lele-ChrLele56 3238681 3241807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0436 82 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 39.103 4.51e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0436 HLH 3.5e-09 No_clan