Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0432 ATGGCGAGGGAGAAAATTAAGATTAAGAAGATCGACAACGCAACGGCGAGGCAGGTGACGTTCTCGAAGCGACGCAGAGGACTCTTCAAGAAAGCTGAGGAGCTCGCCGTTCTTTGCGATGCAGATGTTGCTCTTGTGATCTTCTCCTCTACTGGCAAGCTCTTTCAATACTCTAGTTCAAGCATGAAAGAATTACTAGAAAAGCGTCATTTGCACTCAAAAAACCTCTCGAAGCTTGACCAACCGTCTCTTGAGTTGCAGCTAGTTGAGGACAGCAACTACGCGAGTTTGAGCAAGGAGATTACTGAGAAGAGCCGTCAACTTAGGCGGATGAGAGGAGAGGATCTTCAAAGTTTGAATATTGAAGAATTACAGCAACTTGAGATGTCTCTGGAAGCTGGTTTAAGCCGTGTAATTGAATCGAGGTCACAGATGATGATGGATGAGATCAGTGATCTCGAAAGAAAGGTGGCAGAAATGCCAAGTGAGGAATGTGGTGCTGAGGAAGGTCAGTCATCTGAATCTGTCGGCAACGTTTGCAGCTTCACTGGGCATCCTCAAGATTATGATGTCAACTCAGACACTTTCCTCAGATTGGGGCTACCATATTCTGGTTTATTTTCGTCACTACTACCGAGGACTTTAGAACATGGACTCATAGGTTCTGAATTTCACTGTCTCGACTTGGATCAGGTACTGCATATGGATAGAAATGATTATTGTGGAGGAGAATCCACATCAATCAATCTTAAACAGCTTTGGAAGCGATTCGGCGGCAATGATAATCCTCCAGAGAAGTTAGGCTCAAGCAAATACTACAATGTTGATATGATCCCAAAGCTTGCCATTACTATTCAAATCAGGCTTCAACAGTTCATGATGGCCAATGGAGCTTTGGTTCGGGTTCTCATCCATACTAGTGTTACAAAATATCTGCATTTCAAGGCTGTAGATGGCAGTTACGTGTACAATAAAAAGAAGCTATATGCAGAGTCTTTAGCACGATTTCAAGCGCTTGATGCAGGATGTTTCATGTTTAGAAATGACAGGTTAAGTTTGATGAAAGTGGAAAGGTACCTTTTCTGCTGCTCCTACTCTCACAATGTAACTCCAAAAGGAAAATACATCGCTTTTGTTACCACAGAAGTAGAGACCGAGGATCCTGAAGTGGAATTGAAGCCGGGCATAGATCTTCTTGGACCCACAGATGAGATATTTTTTGAAACTTGCGATAGATATGAACCAGCCAATCAAAGTGCTGACGACAACTGCTTCATATCCACAATGGATCATTTTGGAGTATACAAAGAAATGCCTTCAGATTTGATAAGATTTATCCATCAGGCTGCTGTTATTTCTCAAGGAGTTGGACCTGTCTGTTGA 1383 0.4273 MAREKIKIKKIDNATARQVTFSKRRRGLFKKAEELAVLCDADVALVIFSSTGKLFQYSSSSMKELLEKRHLHSKNLSKLDQPSLELQLVEDSNYASLSKEITEKSRQLRRMRGEDLQSLNIEELQQLEMSLEAGLSRVIESRSQMMMDEISDLERKVAEMPSEECGAEEGQSSESVGNVCSFTGHPQDYDVNSDTFLRLGLPYSGLFSSLLPRTLEHGLIGSEFHCLDLDQVLHMDRNDYCGGESTSINLKQLWKRFGGNDNPPEKLGSSKYYNVDMIPKLAITIQIRLQQFMMANGALVRVLIHTSVTKYLHFKAVDGSYVYNKKKLYAESLARFQALDAGCFMFRNDRLSLMKVERYLFCCSYSHNVTPKGKYIAFVTTEVETEDPEVELKPGIDLLGPTDEIFFETCDRYEPANQSADDNCFISTMDHFGVYKEMPSDLIRFIHQAAVISQGVGPVC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0432 460 SUPERFAMILY FAD/NAD(P)-binding domain 231 336 IPR036188 -
Lele56g0432 460 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele56g0432 460 Coils Coil 94 114 - -
Lele56g0432 460 Pfam GDP dissociation inhibitor 227 339 IPR018203 GO:0005092|GO:0007264
Lele56g0432 460 Pfam GDP dissociation inhibitor 355 429 IPR018203 GO:0005092|GO:0007264
Lele56g0432 460 Pfam K-box region 92 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele56g0432 460 PANTHER RAB GDP-DISSOCIATION INHIBITOR 359 429 IPR018203 GO:0005092|GO:0007264
Lele56g0432 460 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele56g0432 460 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 347 411 - -
Lele56g0432 460 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 259 339 - -
Lele56g0432 460 FunFam Transcription factor, MADS-box 13 83 - -
Lele56g0432 460 ProSiteProfiles K-box domain profile. 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele56g0432 460 PRINTS Rab GDI/REP protein family signature 226 243 IPR018203 GO:0005092|GO:0007264
Lele56g0432 460 PRINTS Rab GDI/REP protein family signature 299 315 IPR018203 GO:0005092|GO:0007264
Lele56g0432 460 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele56g0432 460 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele56g0432 460 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele56g0432 460 SUPERFAMILY FAD-linked reductases, C-terminal domain 358 414 - -
Lele56g0432 460 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele56g0432 460 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Lele56g0432 460 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele56g0432 460 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lele56g0432 460 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0432 Lele-ChrLele56 3199222 3208494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0432 1 205 MADS-box Gene Family AT2G22540 60.166 2.54e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele56g0432 GDI 4.7e-34 CL0063