Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0430 ATGATGGCCACCAAGGTTTATGTGTCCGAGGTTGACAAACTTAAAGCAGAATTGAGAGAGAAGACAGAATCTTTTGAGAATCTTAAGAAATCCCATGATGATCAGGCGTATGAGATTAACGAGGCAAAGATCTTCTGTGAAGAACTTAGGAGGGATTTGCAGAACAAGGAATCTATAATCAAACATATCAGTTCTGCAAATGATAAACTACGTGAGACTTATGAAGAGAGGTTGCAAACATTGGAAGATGAAAAAAGAGCCTTGATTTTGGCGTTACTAGAGGCAAAGGATCAGGCGGCTTGTTTGGAGTCCTCGAAAAGTTTAAAAGCAGCGAATGAAGATGACAAGTTCCACAAGTTACTGGAGGAGGAGAACAGAATGAAGGAAGAACAACTAACATGGAAGAAAGAACAACTTGAGAATCTGCAAGAATCACATAATGTGAAGCAACAAGAGGAGGTTAATCCAAATGAAGAAGATCCAGAGTTGGAAACATACACCATGCTTGATGATATCTCTTCCCTGCAAATAAAGTTGCATTCTCAGACCAAATCTTTAGAGCAACTGGAACGTGAGTTGCATGTGTCCAAACAAGCCCTTGCTCGTGAAGAAAGCATCAGAACGCAACTCGAAACTCAACTTTCAGAATATTCAATCATTGAGGAGATGAAGTTGGAGAACGAGGAGTTGTCAGTGATGGTTCTAGTGTTGCAGCAGGCGATTTGTGAGGCTCAAGCCATGGATAAGGGTGAGAATAATAATGAAGAAGAAAGCGAGCTTGAAATGTACAAGGAAAGACTTGAGGAAGCTTATGAAGCTTTGGACAATGCAATCATTGAATTAGACGAGCTGATCTATGAAGGGATCGAATTGGAATGCGAAGTGGGGACATGGAAGTCAGCTTTTGAAAGATTAAAGAATGATTTGGAAGAAAGCCATGCAAAACGTAAAGAGCTTGAAGCTTCACTTATTTCACAGGTAGTTTATGGAGAAAGCCTCATGCAAGAGAGAATAATAGATGAGCAACATGTAAAGGAAGCAGAGAATGAGAAAGTGAAATTTCTGGAGATCATAGCAAAGAAGGACAAGATTCTAAAGACGCTCCAAAAGGAGATAGGATGGCTAGAACAAGAAACATTTAGAAGAGAATTTGAAAGTGCAGTGGTGGAAAAAGGCCTTGCAGAGAGAACAAAGGAGCATGTGAAAGACGATTTCATACAGCTAATGAATGAGAGAAAGATGAGAATGGATGAAATCATGCAGCAAATGACATCACTTGAAGAGCATTTCTCTAACTCATTGACCACTTTTTCTTCATTGAATTATGAAGATGAAGATGAATTTCCTGATACAGAAGCAGAGGCCACTCTTCAGAAACTGAAGAACGAGATCCAGAAAGCTCAAAGATTGTCACAAGAAAGGGAGAATCTGCTGGACTTTTTTCTGGGGTTGGGTGATAAGATCTGTGAATTCTCAGTTGTAGATTCCGAGCTTATGGATATGCTGGGAAGCATGGTGGAATCTTTTGAGAACAAGGGTGCTGATGACAATGAAGATAACGAGTCACTTACGGAAGCTGCCAGCGAAACCTTCTTGGATAGTCATTTTGATCTAGGGATGACTCTTCCAGAGGATAATGTAAAGAACCCAGTTACATTTATCAAGTGCAGATCCCTTATATCCTGTTTCGGTATGCTCATGTTTCTAGTGTTATTACATTGTCTTGTGGGTTACTGTTATATTGAAGTGTCCCAAAAAGTTATGAAGACGTTGTCGTCAAATTGCCATTCTTTTCTAGGACCAGGCCCACCAAGTGAGCTACCTATTTCTAAGGTGGCAGCCACAGCACTGGCAAGGTCTTATAACCTATTACAACGTTGTCCTGTCACAGTGAAGTTGATTCCAGCCATTGGCATTATCATTTTTGCCGTATGGGGTGTTGGCCCATTAATGTATTACGCAAGAAAACTGCTTCTCCAGAGGAGCGACAATAGTTGGAAGAAAAGTAGGACGCATTATGTAGTAACTTCTTACATTCAGAAATTACTGTTATGGACTGGAGCTATGCTTATTTGCAGAGCCTTAGACCCATTAAGTTTACCTTCAGAAGCAGCTCAAGCTGTCAAGGAACGGCTTCTGAGTTTTGTAGGATCATTGTCAACTGTACTTGCCTGTGCCTATTGTTTATCACGTGTGATTCAACAAGCACAGAAATTCTTCATGGAGAGTGCTGCTGATACCTGTGAGACAAGAAATATGGGATTCCATTTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCTTCTCTTTGTTCATGGAGTTGCTGGGCTTTTCTACTCAGAGGTGGGTTACCGCAGGAGGTCTTGGGACTGTTTTGTTTACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGCAATAATTCATGCAACTCGGCCTTTTGTGGTGAATGAATGGATTCAAACAAAGGTCGAAGGATATGAAGTTTCTGGTACGGTGGAGCATGTTGGCTGGTGGTCACCAACAATTATACGCGGCGAAAATCGTGAAGCTCTTTACATTCCAAACCACAAGTTCACAATGAACGTTGTGCTAAACCTCAGTCAGAAAACACATTGGCGCTTCAAGACACACATGGCTATTAGCCATATGGATGTTAATGAGATAAATATATTGGTGTCCTGTTTTGTCAAGACCGCATACCAGGAAGAATTTTTGTGCGTTGAAGAAGCTTTACTACTGGATCTTCTTAGGGTTATTGGCCATCACCGAGCTCGACTTGCAACACCAGTTCGTACACTGCAGAAAATCCACACTGACGCTGACTTAGAAAACATACCATATTTGGATTCTGCATTTCCAGTAACAAATAATCCAATAATAATAGAACCACCATACGAGATCAAAGCAGATGATACGACAAAAAGTCATAACAAGACAGCCACGCAAACCAAGGTTGGACCAACAGTTTCAGATTTTAAGGTTAGAGAAACTCATTCTGACTCCAGGGCAGATGTTGAAGCTGTGATATCTAATTCTGCTGCAAACGGAAGCTTGAAGGTTGCCGTTACATCATCCAAACCCAATCATGAAGTGGGTAAACATGAGCCAATGAAAATGGAGTCAAGTAGTATGTCTGCTTCTGACTCCAAAGTTAGTGAAGCTGCTGTAAATAACATGACCGAGAAGAATTCTGATGTCGTACAATCTAAGAATTCTGTCAAAGGAGGTGGACGTTCAAAGAATATGCAGACAAAACAGAAAGATGAAAGGAAACAAGTTGGACAACCTCAAATGTCTAGGCCTGTCCTTGAAGATAATATAGTACTTGGCGTAGCATTGGAGGGATCAAAAAGAACGCTTCCTATTGATGAGGGAATGGATTCATCTTCTGCTCGAGAGTCAAAAGAAATGGCCGCCCAGGGTAGAAATAGATCCCTGACAGCTGAGAATGGGGAAGATAAGCAAGATTTTATTTGCTTCAGGAGAAATTATCTGGCAGTCTGA 3522 0.4097 MMATKVYVSEVDKLKAELREKTESFENLKKSHDDQAYEINEAKIFCEELRRDLQNKESIIKHISSANDKLRETYEERLQTLEDEKRALILALLEAKDQAACLESSKSLKAANEDDKFHKLLEEENRMKEEQLTWKKEQLENLQESHNVKQQEEVNPNEEDPELETYTMLDDISSLQIKLHSQTKSLEQLERELHVSKQALAREESIRTQLETQLSEYSIIEEMKLENEELSVMVLVLQQAICEAQAMDKGENNNEEESELEMYKERLEEAYEALDNAIIELDELIYEGIELECEVGTWKSAFERLKNDLEESHAKRKELEASLISQVVYGESLMQERIIDEQHVKEAENEKVKFLEIIAKKDKILKTLQKEIGWLEQETFRREFESAVVEKGLAERTKEHVKDDFIQLMNERKMRMDEIMQQMTSLEEHFSNSLTTFSSLNYEDEDEFPDTEAEATLQKLKNEIQKAQRLSQERENLLDFFLGLGDKICEFSVVDSELMDMLGSMVESFENKGADDNEDNESLTEAASETFLDSHFDLGMTLPEDNVKNPVTFIKCRSLISCFGMLMFLVLLHCLVGYCYIEVSQKVMKTLSSNCHSFLGPGPPSELPISKVAATALARSYNLLQRCPVTVKLIPAIGIIIFAVWGVGPLMYYARKLLLQRSDNSWKKSRTHYVVTSYIQKLLLWTGAMLICRALDPLSLPSEAAQAVKERLLSFVGSLSTVLACAYCLSRVIQQAQKFFMESAADTCETRNMGFHFAGKAVYSAVWIAAFSLFMELLGFSTQRWVTAGGLGTVLFTLAGREIFTNFLSSAIIHATRPFVVNEWIQTKVEGYEVSGTVEHVGWWSPTIIRGENREALYIPNHKFTMNVVLNLSQKTHWRFKTHMAISHMDVNEINILVSCFVKTAYQEEFLCVEEALLLDLLRVIGHHRARLATPVRTLQKIHTDADLENIPYLDSAFPVTNNPIIIEPPYEIKADDTTKSHNKTATQTKVGPTVSDFKVRETHSDSRADVEAVISNSAANGSLKVAVTSSKPNHEVGKHEPMKMESSSMSASDSKVSEAAVNNMTEKNSDVVQSKNSVKGGGRSKNMQTKQKDERKQVGQPQMSRPVLEDNIVLGVALEGSKRTLPIDEGMDSSSARESKEMAAQGRNRSLTAENGEDKQDFICFRRNYLAV 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0430 1173 Gene3D - 819 874 IPR023408 -
Lele56g0430 1173 Coils Coil 11 31 - -
Lele56g0430 1173 Gene3D - 713 817 - -
Lele56g0430 1173 MobiDBLite consensus disorder prediction 1046 1086 - -
Lele56g0430 1173 Coils Coil 125 145 - -
Lele56g0430 1173 Coils Coil 302 322 - -
Lele56g0430 1173 Pfam Mechanosensitive ion channel 760 888 IPR006685 GO:0016020|GO:0055085
Lele56g0430 1173 SUPERFAMILY Sm-like ribonucleoproteins 803 873 IPR010920 -
Lele56g0430 1173 Coils Coil 172 206 - -
Lele56g0430 1173 MobiDBLite consensus disorder prediction 1126 1156 - -
Lele56g0430 1173 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 592 896 IPR045042 -
Lele56g0430 1173 Coils Coil 67 98 - -
Lele56g0430 1173 MobiDBLite consensus disorder prediction 1025 1103 - -
Lele56g0430 1173 Coils Coil 450 477 - -
Lele56g0430 1173 Coils Coil 220 240 - -
Lele56g0430 1173 Coils Coil 246 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0430 Lele-ChrLele56 3179688 3186289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0430 589 1155 Mechanosensitive Ion Channel Family AT5G10490 50.729 0.0 573