LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g0422	ATGGATTTCAGAGGGAAAGGAGGAAGAGGAGAGGCGTGCGAGGAGGAGGCATCTCCAAGAGGCGTGCTGGAGATGACGGGGGAGTCAGATCGGGGAAGTAGCGGATGCAGCACGTGCTCAGGGGAGAGGCCGCCGGCTGCGGGGGGGCAGGGTCAGATGCCGCAGTGGAAGGGAGTGATGGACGCGTTGAGGATAAACTCGGTGAAGAGGCTGTCGGCGATACCGTTGTTCGCGTCCACGTACATGATATCTCGGAAGAGCCTGAAGAAGTGGGCGCGCATCAGGAGCGCAGAAGACGCCATAGATCTTATTTCTTTGGCCACCAAGTCCTCCTGGAAAACCTTCTCTTACTCGGACCTTGCCGTTGCCACCGACGATTTCAGTCCTAAGAACATGATCGGGAAAGGTGGGCATGCAGAGGTGTACATAGGACGCTTACCAGATGGGCAAATCGTAGCAGTAAAGAAGCTTGTGAATGAGGAAAAGGACGACGCAGATGACACCGGAGATTTCTTGACGGAGCTCGGAATCATCGCCCACATCAACCATCCTAATTGTTGCGGGTTGATTGGCTTCGGCATCGACAAGGGCCTCTTCTTTGTCCTTCACTATGCTGCTCACGGCAGTCTCTCCTCTCTCCTCTTTGGGTCCAAAAAGCTGGAGTGGAATGTTAGGTTCAAGGTAGCCATTGGAATTGCCCAGGGGCTGCAATATCTTCATCATGAATGCCCAAGACGAATCATTCACAGAGACATCAAGGCCTCCAACATCTTGCTCGATGAAAACTACGAACCTGAGATCTCAGATTTTGGATTGGCAAAGTGGCTCCCAGAAAAGTGGGACCACCATGTCGTCTTCCCTATAGAAGGCACATTTGGGTATCTAGCTCCAGAGTATTTTATGCATGGACTTGTGGATGAAAAGACCGATATTTTCGCTTATGGGGTTTTGTTGCTTGAGATCATTACAGGTCGTATGGCCGTTGATTCTGATAGTAGGCAAAGTCTTGTGATCTGGGCGAAGACCCTACTGGACGCGAAAAACATGAAGGAATTAGCAGACCCTAGATTAGAAGAAGATTATGATCCTATAGAAATGGAGCGGGCCATGGTTACTGCTTCCGTGTGTGTAAACCACTCAGCTTCCAAGCGTCCCTTAATGACTCGGGTAGTGCAGATGCTGAAGGGAGAAGAAGGACCTGTTGAAGCCAAGCCACAAAAATCCACAGCCCCAAGATCCCTCATGTTGGATGCCTGTGATCTTGAAGATTATACTTGCTCCAGTTACTTGAACGATCTCAATCGTCACAGGCAATTAATCATGGAATGA	1329	0.5026	MDFRGKGGRGEACEEEASPRGVLEMTGESDRGSSGCSTCSGERPPAAGGQGQMPQWKGVMDALRINSVKRLSAIPLFASTYMISRKSLKKWARIRSAEDAIDLISLATKSSWKTFSYSDLAVATDDFSPKNMIGKGGHAEVYIGRLPDGQIVAVKKLVNEEKDDADDTGDFLTELGIIAHINHPNCCGLIGFGIDKGLFFVLHYAAHGSLSSLLFGSKKLEWNVRFKVAIGIAQGLQYLHHECPRRIIHRDIKASNILLDENYEPEISDFGLAKWLPEKWDHHVVFPIEGTFGYLAPEYFMHGLVDEKTDIFAYGVLLLEIITGRMAVDSDSRQSLVIWAKTLLDAKNMKELADPRLEEDYDPIEMERAMVTASVCVNHSASKRPLMTRVVQMLKGEEGPVEAKPQKSTAPRSLMLDACDLEDYTCSSYLNDLNRHRQLIME	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g0422	442	Pfam	Protein kinase domain	130	392	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele56g0422	442	SMART	serkin_6	127	439	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele56g0422	442	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	206	408	-	-
	Lele56g0422	442	Gene3D	Phosphorylase Kinase; domain 1	101	204	-	-
	Lele56g0422	442	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lele56g0422	442	ProSiteProfiles	Protein kinase domain profile.	127	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele56g0422	442	SUPERFAMILY	Protein kinase-like (PK-like)	108	394	IPR011009	-
	Lele56g0422	442	MobiDBLite	consensus disorder prediction	1	54	-	-
	Lele56g0422	442	Gene3D	Transferase(Phosphotransferase) domain 1	206	412	-	-
	Lele56g0422	442	ProSitePatterns	Protein kinases ATP-binding region signature.	133	156	IPR017441	GO:0005524
	Lele56g0422	442	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468
	Lele56g0422	442	PANTHER	OS08G0249100 PROTEIN	13	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g0422	Lele-ChrLele56	3134666	3137575	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g0422	113	397	Receptor kinase-like Gene Family	AT1G34210	43.390	2.14e-67	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lele56g0422		Pkinase	3.1e-40	CL0016