Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0407 ATGTATAATGGGATCGTTAGCGTTATGGTGTCAAGGCCAGACGGCAATTTGTTGGGAGTATCATATAATGGGATTGATAATCTTCTTGGACCTCTTAATGATCTTAATGATAGAGGATTGAAAGGGACGACGTGTTCTGTTATAATGGAGACCGAAGATCAGGCTGAAGTTTCTTTCTTATACACATGGAATTCTTCCTTGCCTGCAGGAAGAATCCCAATGAATGTAGATATAAGGTATATTTTACGTAGAGGCAGCTCAGGATTATATTCATATGCCATATTGGAGCGTCCAGAAGATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGTTTACAAGCTCAACCAATACCTGTTCCACTACATGGCTATAACAGACGAAAGGCAAAGAGAAATGCCGACTGCTGATGATAGATCCAAGGGCCAGACCCTTGATTATCCTGAAGCTGTCCTCTTAACCCATCCTAGTGACCCTAAATTCTCAGGAGAGGTGGATGATAAATACATGTACTCGGTTGAGAACAAAGACAACAAAGTCAGCGGATGGGTCTCTTTTAACGCTACCAATTCTTCATCAGTTGGCTTCTGGATGATTACACCCACCAACGAATTCCGTAACGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGTCCTGTCACCCTCAATTCTTTCCTGAGCCCGCACTATGCTGGGAAGGACATATCTATGATATTTAAAGGAGAGACCTATAAGAAGGTGTTCGGACCCACTTTTCTGTACCTCAACACTGTGCCAAACCCCCATGATTCTCCAACTCTCTGGCAGGATGCTAAAAACCAGTTGCAAAAGGAAGTTAATAGCTGGCCCTATGATTTCCCTCAATCAAAAGATTTCATTCCATCCAATCAACGTGGAAAAGTGTCAGGACAATTAATAATCAAATGGTACGCGACAGGTGCTACGTCATTTAACGCTAGTAATGCTTACGTTGGTCTAGCCCTCCCAGGCGATGAAGGATCATGGCAATCAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGATAACGGCGGCTTCTTCACTATACAAAATGTTTTGCCTGGGGACTACAACTTCTATGCTTGGGTCCCTGGCATTCTTGGTGATTACAAATACGAGTTTAACATTACCATCAAACCAGGAGATGTCATCCAATTAGGTCAATTATATTATTGGCCTCCAAGAAGTGGTCCTACGGTTTGGGAAATTGGAATTCCTGATCGATCAGCTGAAGAATTTTATGTGCCAGACCCATATCCTAACCTCATTAACAACTTATACATAGGAAAGGCCAAAGACAGGTTTAGACAGTACGGTTTGTGGAAACGTTACGCTGAACTATATCCAACTAATGACCTCGTTTACCATGTTGGTGTTAGTGATTATTCCAAAGATTGGTTCTATGCTCAAGTCACCAGGGACCTAGGAAATGGCACATACAGTGCAACAACATGGGAGATAAGATTTGAACTGCCATTTATCATTCCAGGAAGTTACACACTACGTATTGCCTTAGCATCATCCACTAATGCTCACTTATTTGTTTGGGTGAATAAAGGTGAGAATCGTCACCTGCGGTTCAACACAGGAATAAGAGGGGAGGACAATGCAGTAGCAAGGCACGGGATACATGGATTGTATTTCAAGTACAGCTTTCAAGTACCAAGCTATCTCCTTGTGAAAGGGACTAACTCCATTCACCTCTCACAGCCCAAGGCTAAATCTCCATTTGAAGGAATTATGTATGATTATATCCGTTTTGAAAGCCCCTCGCTTTATGGCTCTGGTCATAAGAATTAA 1827 0.4253 MYNGIVSVMVSRPDGNLLGVSYNGIDNLLGPLNDLNDRGLKGTTCSVIMETEDQAEVSFLYTWNSSLPAGRIPMNVDIRYILRRGSSGLYSYAILERPEDFPAIRVDVFRLVYKLNQYLFHYMAITDERQREMPTADDRSKGQTLDYPEAVLLTHPSDPKFSGEVDDKYMYSVENKDNKVSGWVSFNATNSSSVGFWMITPTNEFRNGGPTKQSLTCHVGPVTLNSFLSPHYAGKDISMIFKGETYKKVFGPTFLYLNTVPNPHDSPTLWQDAKNQLQKEVNSWPYDFPQSKDFIPSNQRGKVSGQLIIKWYATGATSFNASNAYVGLALPGDEGSWQSESKGYQFWTQADNGGFFTIQNVLPGDYNFYAWVPGILGDYKYEFNITIKPGDVIQLGQLYYWPPRSGPTVWEIGIPDRSAEEFYVPDPYPNLINNLYIGKAKDRFRQYGLWKRYAELYPTNDLVYHVGVSDYSKDWFYAQVTRDLGNGTYSATTWEIRFELPFIIPGSYTLRIALASSTNAHLFVWVNKGENRHLRFNTGIRGEDNAVARHGIHGLYFKYSFQVPSYLLVKGTNSIHLSQPKAKSPFEGIMYDYIRFESPSLYGSGHKN 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0407 608 Pfam Polysaccharide lyase family 4, domain II 322 394 IPR029413 -
Lele56g0407 608 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 600 - -
Lele56g0407 608 SUPERFAMILY Galactose mutarotase-like 6 264 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele56g0407 608 CDD RGL4_M 299 398 IPR029413 -
Lele56g0407 608 CDD RGL4_C 410 597 - -
Lele56g0407 608 SUPERFAMILY Starch-binding domain-like 298 397 IPR013784 GO:0030246
Lele56g0407 608 Pfam Rhamnogalacturonate lyase family 2 165 IPR010325 -
Lele56g0407 608 Gene3D - 295 395 - -
Lele56g0407 608 CDD RGL4_N 3 266 - -
Lele56g0407 608 SUPERFAMILY Galactose-binding domain-like 405 597 IPR008979 -
Lele56g0407 608 Gene3D - 6 271 IPR014718 GO:0030246
Lele56g0407 608 Pfam Polysaccharide lyase family 4, domain III 408 595 IPR029411 -
Lele56g0407 608 Gene3D - 405 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0407 Lele-ChrLele56 3067434 3071565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0407 1 600 Polysaccharide Lyase AT1G09890 52.251 0.0 632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1050 53 19800569 19810180 Lele56g0407 56 3067434 3071565 hybridization
Lele54g1030 54 16432534 16440213 Lele56g0407 56 3067434 3071565 hybridization