Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0406 ATGTTAATATTACTAAAAAAGAAGCTGGAGTTGCCAGGAGGTTATATATTTATGAAGATCCGAGAAAAATTACAGCCCTGTGATCAGACAAAACCTTGGTCTTCCATTCATCTTCTACGGTTTTCAGCATTGGTTTCATACAAAGCTGTGAAAGATGAAGTTAGGAGAGATAAGGAAACGAGTTCTCTTGTTGTGGTGGTTTGGAATGAATCTGCAGCTCTTCTTTTTGCAATGTGGTTCAGAAAGATCCTGGGGAGAAATATGAACAGTACTACAAAACCCAGTTCTGCAGTTAAGTTGAATACAGAACATCATGGGAAAGTGGTGCTTGACAATGGCATAGTCCAAGTCACTCTGTTAAGACCCGAGGGGAATGTCGTGGGAATCTCATATAATGGAATCGACAATGTACTAGAATCTCGTAATGATGACCAAGACAGAGGGTATTTTGATGTGGTTTGGAAGAAACCAAGAGAACATAATCATCATCATCATGATGATCAAAGAATCGACGGAACAAAGTTTACAATCGTAGCAGCAGACAAAGATCAAGTGGAGATATCGTTTATAACAACATGGAAATCTTCCATGGAAGGCAAAAGTGTCCCCATCAACGTAGACCAAAGGTATATATTGCGACGAAGTAGCTCTGGATTCTACTCTTACATTATATTCGAGCGTCCAGAAGGATTTCCAGCAGTGGAGGTTGAGCAAATCAGGAGTGTTTACAAGCTTCAGGAAGACAGGTTCCACTATATGGCTATATCAGACACTAGGCAAAGATACATGCCAACAATGGAAGATAGAAAAAGAGGGAAAACCTTAGCTTATCCTGAAGCTGTTCTCTTAACCAACCCATCCAATGAAATCTTTAAAGGAGAGGTGGACGACAAATACCAGTATGCTTGTGAGAACAAAGACAACAGAGTACATGGTTGGATTAGCATGAATTCTGATGCAGCCATGGGGTTCTGGATTATAACACCTAGCAATGAATTCCGCAATGGTGGGCCCATCAAGCAAGATCTTACCTCTCATGTTGGCCCCTTTGCCCTCTCTATGATTATGAGCATGCACTTGGCTGGGAAGGATTTAGCCATGGAATTTCGAGAAGGGGAGACGTATAAGAAGGTTTTTGGCCCTGTTTTTGTTTATCTTAACTCCATTTCGAGCAATGTCAATGCACATACGCTCTGGCGAGATGCTGTGCAACAAATGTCCAAGGAGGTCAGAAGCTGGCCTTATGATTTCCCAAAATCACAAGATTATATTCCAGCCACCAAACGTGGAACTGTGACTGGAAGATTACTGGTTCAAGATCGGTATATCCAAGGAGGCAGGTTTCAGAATGCTAACTCTGCTTATGTTGGTTTAGCTTTGCCTGGTGTTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGATTCAAGCTGACAAGAAGGGCTACTTCGCGATAAAGAATGTTATACCGGGAAACTATAATTTGTTTGCATGGGTTCCAGGCTTTATTGGTGATTACAAATATAATACAACAATCACCATCACACCAGGTATGGCACTTTCTTCGACATCCTTCTGGTTTGGTGTAAACCCTAATCTCAACCTGCTTAGTCACATAACAAATTGTTGTGTATGTGTAGGATGTTGGATCAAATTGGGTTTTCTGGTATACAGTCCTCCAAGAAATGGTCGTACCGTATGGGAAATTGGAGTCCCAGATCGCTCAGCAGCAGAATTCTATATCCCAGACCCAAATCATAAACTCCTGAACAAGTTATACAACAATCATCCCAGAGAAAAGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTATATCCAAAAAATGATTTAGTTTACAATGTTGGTGTTGACTCTCATGATAAAGATTGGTTCTTTGCTCATGTTACAAGGAACATAGGAGATAACAGGTATCAACCAACTACATGGCAGATTAAGTTTGAACTTCAAAGACGCCATCTATTAGTAGGAAATTACACCCTACAACTAGCTTTAGCATCAGCCACTGATTCTAAATTGCAGGTTTGGTTTAATGAGCAATGTGAGAAGCGTCCTCTATTTAAAACTGGAATGTTAAGAGGAGATAATGCCATAGCAAGGCATGGAATCCATGGATTATATCGGTTATTCAGCATTGATGTTCCAAGTGATCTCTTAGTGGAAGGGAACAACACTGTCTATTTAAAGCAGCCACTTGCCATTAATCCTTTCCAAGGACTTATGTACGATTATTTACGTCTAGAAAGACCTCCCACTCTAAGAATTTGA 2301 0.4055 MLILLKKKLELPGGYIFMKIREKLQPCDQTKPWSSIHLLRFSALVSYKAVKDEVRRDKETSSLVVVVWNESAALLFAMWFRKILGRNMNSTTKPSSAVKLNTEHHGKVVLDNGIVQVTLLRPEGNVVGISYNGIDNVLESRNDDQDRGYFDVVWKKPREHNHHHHDDQRIDGTKFTIVAADKDQVEISFITTWKSSMEGKSVPINVDQRYILRRSSSGFYSYIIFERPEGFPAVEVEQIRSVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKTLAYPEAVLLTNPSNEIFKGEVDDKYQYACENKDNRVHGWISMNSDAAMGFWIITPSNEFRNGGPIKQDLTSHVGPFALSMIMSMHLAGKDLAMEFREGETYKKVFGPVFVYLNSISSNVNAHTLWRDAVQQMSKEVRSWPYDFPKSQDYIPATKRGTVTGRLLVQDRYIQGGRFQNANSAYVGLALPGVAGSWQRESKGYQFWIQADKKGYFAIKNVIPGNYNLFAWVPGFIGDYKYNTTITITPGMALSSTSFWFGVNPNLNLLSHITNCCVCVGCWIKLGFLVYSPPRNGRTVWEIGVPDRSAAEFYIPDPNHKLLNKLYNNHPREKFRQYGLWARYAELYPKNDLVYNVGVDSHDKDWFFAHVTRNIGDNRYQPTTWQIKFELQRRHLLVGNYTLQLALASATDSKLQVWFNEQCEKRPLFKTGMLRGDNAIARHGIHGLYRLFSIDVPSDLLVEGNNTVYLKQPLAINPFQGLMYDYLRLERPPTLRI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0406 766 FunFam Rhamnogalacturonate lyase B 425 525 - -
Lele56g0406 766 Pfam Rhamnogalacturonate lyase family 91 295 IPR010325 -
Lele56g0406 766 Pfam Polysaccharide lyase family 4, domain II 452 521 IPR029413 -
Lele56g0406 766 Pfam Polysaccharide lyase family 4, domain III 568 758 IPR029411 -
Lele56g0406 766 Gene3D - 100 403 IPR014718 GO:0030246
Lele56g0406 766 CDD RGL4_M 428 520 IPR029413 -
Lele56g0406 766 SUPERFAMILY Galactose mutarotase-like 102 389 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele56g0406 766 Gene3D - 424 526 - -
Lele56g0406 766 SUPERFAMILY Galactose-binding domain-like 565 759 IPR008979 -
Lele56g0406 766 CDD RGL4_N 101 388 - -
Lele56g0406 766 SUPERFAMILY Starch-binding domain-like 423 521 IPR013784 GO:0030246
Lele56g0406 766 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 99 762 - -
Lele56g0406 766 CDD RGL4_C 570 759 - -
Lele56g0406 766 Gene3D - 565 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0406 Lele-ChrLele56 3061536 3065141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0406 96 761 Polysaccharide Lyase AT1G09890 52.749 0.0 699