Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0405 ATGGAGCTGGGAAGTTTTGTATTTTGCAGAGATTTGTTTTCATTTTGGGAAGAGAAGATGAAGAAGATGGGTGAGATGAGGAAACTGGTAATCTTGTTGTGGTGGTTAGGAATGACTGTGGAGTTATGCTTCTTGTTGCAGCTGGGTGCTTTTAAGCTGAATACAGGAGATCATGGGCAAGTGGTGATTGAGAATGGCATTGTTCAGGTCACTCTGTCCAGCCCCGAGGGATATATTCTCAGCGTATCATATGACGGAATCGACAATGTACTAGAATCTCGCAACGAAGAACAAGAAAGAGGGTATTTTGATGTGGTCTGGAATAAGCCCGGGGGAAACAGTACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCCGTGGACGACGACCAAGTGGAGATTTCGTTTGTAAGAATATGGACGCCTTCCCTGGAAGGCGAAAATGTCCCCATGAACATAGACCAAAGGTATGTATTGCGGAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGACCAGAAGGATTTCCAGCAATGGAAGTTGATCAAATCAGGAATGTTTTCAAGCTGCAGGAAGAAACGTTCGTCTATATGTCTATATCAGACACAAGGCAAAGGTACATGCCAAGCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCTGTTCTCTTAACCAATCCATCTAATGAAGACTTTAGAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAATAAAGACAACAAAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATTACACCCAGCAACGAGTTTCGCAATGCTGGGCCCATCAAACAAGACCTCACTTCTCATGTGGGCCCATATGCCCTCTCCATGTTTGTGAGCACTCACTACGCCGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTATAAGAAGGTTTTCGGCCCTATTTTCGTGTATCTTAACTCTGTTTCAAGCTCTGAGAATTTTCTCAGACTCTGGACAGATGCTGTTCAACAGATGTCAAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCTCAATCACAAGCTTACAATCCGCCCACTCAACGTGGAAGCGTTGTTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTCTATGCTGACTCTGCATCTGTTGGTCTTGCACTTCCCGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACCCAAGCAAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCTGGAGATTACAACTTGTTCGCATGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGCTACAATCAACATTACACCAGGATGTGTAATCAAATTGGATTCGCTAGTATATAATCCGCCGAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCTGCTGCAGAATTCTATATCCCAGACCCTTACCCTACACTCATGAACAGATTATACAATGAACAACCCAAAGAAAAGTTTAGACAATATGGATTATGGGAACATTATGCTGATTTATATCCAAACAGTGATCTAGTCTACACTGTTGGTGTTAGTTCATATAATCAAGATTGGTTCTATGCTCATGTTCCAAGGAGCACTGGAAATAAGACGTACAAGGCAACAACATGGCAGATTAGATTTAATCTTCAAAATGATCCATTCAAAGGAAATTACACCCTGCAACTAGCCGTAGCAGCAGCCTCTAATTCTAACCTAAAGATCTGGATGAATGGGCAAGGTAATGTTCCTGCTTTGTTTGAAACTGGGAAATTTGGAGGAGATAGTGCCATATCAAGGCATGGAATCCATGGATTGTACTGGTTATACAGCATTGAAGTTCCAAGCGATGCTTTAGTGAAAGGGAATAATACAATCTATTTACAACAGTCATTAGCCATATATCCTTTTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTCTAA 2049 0.4212 MELGSFVFCRDLFSFWEEKMKKMGEMRKLVILLWWLGMTVELCFLLQLGAFKLNTGDHGQVVIENGIVQVTLSSPEGYILSVSYDGIDNVLESRNEEQERGYFDVVWNKPGGNSTFQRIHGTEFSVVSVDDDQVEISFVRIWTPSLEGENVPMNIDQRYVLRRGDSGFYSYTIFERPEGFPAMEVDQIRNVFKLQEETFVYMSISDTRQRYMPSMKDRETGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENKDNKVHGWISVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPYALSMFVSTHYAGKEVTMEFQEGETYKKVFGPIFVYLNSVSSSENFLRLWTDAVQQMSKEVKSWPYDFPQSQAYNPPTQRGSVVGRLLVQDWYIRGGRFLYADSASVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGDYNLFAWVPGFIGDYRYNATINITPGCVIKLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNRLYNEQPKEKFRQYGLWEHYADLYPNSDLVYTVGVSSYNQDWFYAHVPRSTGNKTYKATTWQIRFNLQNDPFKGNYTLQLAVAAASNSNLKIWMNGQGNVPALFETGKFGGDSAISRHGIHGLYWLYSIEVPSDALVKGNNTIYLQQSLAIYPFQGVMYDYIRLERPPTL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0405 682 CDD RGL4_M 377 477 IPR029413 -
Lele56g0405 682 CDD RGL4_C 489 677 - -
Lele56g0405 682 Pfam Rhamnogalacturonate lyase family 57 244 IPR010325 -
Lele56g0405 682 Gene3D - 50 356 IPR014718 GO:0030246
Lele56g0405 682 Gene3D - 484 677 - -
Lele56g0405 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 55 680 - -
Lele56g0405 682 SUPERFAMILY Galactose mutarotase-like 55 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele56g0405 682 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Lele56g0405 682 CDD RGL4_N 57 340 - -
Lele56g0405 682 SUPERFAMILY Starch-binding domain-like 374 475 IPR013784 GO:0030246
Lele56g0405 682 Gene3D - 374 475 - -
Lele56g0405 682 FunFam Rhamnogalacturonate lyase B 374 474 - -
Lele56g0405 682 SUPERFAMILY Galactose-binding domain-like 484 677 IPR008979 -
Lele56g0405 682 Pfam Polysaccharide lyase family 4, domain III 487 676 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0405 Lele-ChrLele56 3056107 3060466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0405 52 679 Polysaccharide Lyase AT1G09890 54.905 0.0 712
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1052 53 19823618 19828507 Lele56g0405 56 3056107 3060466 hybridization
Lele54g1032 54 16447672 16452109 Lele56g0405 56 3056107 3060466 hybridization