Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0399 ATGGGAAGAGGGAAGATTGCGATCCAAAGGATTGAAGATACAGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGATGAAGAAAGCGAGAGAGCTTTCGATCCTTTGTGATGTAGAAGTTGGACTCGTCATATTCTCCAGCACTGGAAGGCTTCATGAATATGCCACCACCAGCATAAAATCAGTGGTTGAGAGATATAACAGCTGCAAGGAGGAACATGAAAGACTGATGAATCCAGAATCAGACGTCAATTTCTGGCAAAGGGAGGCAGAAATATTAAGGCAGCAAGTACATAATCTACAAGAAAACCATAGGAAATTAATGGGAGAACAGCTTTATGGTTTGAGTTTTAAAAACCTACAAGATATAGAGAATCAACTGGAGATAAGTCTGCGAGGTGTCCGCATGAAAAAGGAACAAATTCTAACAGAAGAAATCCACGAGCTGAGAAGAAAGGGAAACGCTATCCATCAGCAAAATGTACAACTCTATAAGAAGGTCAACCTTGTTCAACAGCAAAACATGCAACTATGCAATGAGGTATATGGCACAACAGATGCGGCTGTAGCAAGCAGAAATGCATTCATTTCATATCAAGAAGATCATCCACAAGCAATGACCCAACTTCAGTTATCGCAGCCTGAGCTTGATGCTCACGAGACATCAGGCAGTGCTACAAGATGA 693 0.417 MGRGKIAIQRIEDTASRQVTFSKRRKGLMKKARELSILCDVEVGLVIFSSTGRLHEYATTSIKSVVERYNSCKEEHERLMNPESDVNFWQREAEILRQQVHNLQENHRKLMGEQLYGLSFKNLQDIENQLEISLRGVRMKKEQILTEEIHELRRKGNAIHQQNVQLYKKVNLVQQQNMQLCNEVYGTTDAAVASRNAFISYQEDHPQAMTQLQLSQPELDAHETSGSATR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0399 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele56g0399 230 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lele56g0399 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele56g0399 230 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele56g0399 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Lele56g0399 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele56g0399 230 Coils Coil 86 113 - -
Lele56g0399 230 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0399 Lele-ChrLele56 3011618 3015228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0399 1 228 MADS-box Gene Family AT2G22630 55.459 1.94e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele56g0399 K-box 2.9e-26 No_clan