Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0392 ATGCTCTTAAACATATCTAATGGCTTGAAATAGCAGAGCTTTGTGCTTAATGGAAGGCCCCTGAGCTTTCTCTCTCTTTCGGCTTTTCCCTTCAATACCTTTGCTTTGCATTTTCCTGCGAAAAAGTTTCTGAAGAATAATCGGAGGTTTTCTTCTTTGCTGATCTACCAAGACTACGTTTGTTGGAGCCTGATGTCTCCACCAGTTCTGAGTGCTCAGGAGGAAGGGCAGAGTAACACCTCAACAATAACTTCTTCACGATCATTAGATCTTATCTCCCAAAATGTGACTGGATTAAAAGAACGCAATTACCTAGGGTTATCAGATTGTTCATCATGGGACAGCTCTACTGTTCCAAGCGACTCAGCTGAGAAAAAGGACAATCTGAATTTGAAGGCTACAGAATTGAGGTTGGGTCTTCCAGGATCCCAATCACCTGAAAGGGATGATAGCTTAACAAAACTTGATGAGAAGCCGATGTTTCCTTTTCTTCCTTCAAAATATGGGATCTGCTCATTGTCCCAGAAAACTGTGATTACAGGCAACAAAAGGGGATTCTTTGATACCATGGATGGGTTCACTGAGGGGAAGTTTCCTGGGAATTCGGGGGCAAATCTGCTGCTGTCTCCTAGATCTGCTAGAGCTCAGCAAACCACGACAAATGAAATGGCGAATAAGGTGTTGCCAGAACGGCCAAGTGCAACTAATGGAGCAGGCCACAGCAAAACGGATGCTTCTATCGGTGGCAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAGAACTCGTTGGCTGTCTCTTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGTCCCGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGATCTTAGGAGTTACAACACATACCAGGATCTGTCTTCTGCCCTTGAGAAGATGTTCTGTTGTTTTACCCTGGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGACATGTTGAGTGAGAGCAAGCTAAGGGACCTCCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGTGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCTATTGGCTTGGCTCCCAGGGCCATGGAGAAATCCAGGAGCAGGAGGTAG 1233 0.4501 MLLNISNGLKXQSFVLNGRPLSFLSLSAFPFNTFALHFPAKKFLKNNRRFSSLLIYQDYVCWSLMSPPVLSAQEEGQSNTSTITSSRSLDLISQNVTGLKERNYLGLSDCSSWDSSTVPSDSAEKKDNLNLKATELRLGLPGSQSPERDDSLTKLDEKPMFPFLPSKYGICSLSQKTVITGNKRGFFDTMDGFTEGKFPGNSGANLLLSPRSARAQQTTTNEMANKVLPERPSATNGAGHSKTDASIGGSAPASKAQVVGWPPIRSFRKNSLAVSSKNNDEVDGKPSPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFCCFTLGQCGSHGAPGRDMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0392 410 FunFam Auxin-responsive protein 285 402 - -
Lele56g0392 410 Pfam AUX/IAA family 134 401 IPR033389 -
Lele56g0392 410 MobiDBLite consensus disorder prediction 229 254 - -
Lele56g0392 410 Gene3D - 286 403 - -
Lele56g0392 410 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 129 397 IPR003311 GO:0005634|GO:0006355
Lele56g0392 410 ProSiteProfiles PB1 domain profile. 290 394 IPR000270 GO:0005515
Lele56g0392 410 MobiDBLite consensus disorder prediction 236 250 - -
Lele56g0392 410 SUPERFAMILY CAD & PB1 domains 287 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0392 Lele-ChrLele56 2958141 2962406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0392 294 400 B3 DNA Binding Superfamily AT4G23980 29.907 5.85e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele56g0392 AUX_IAA 1.1e-88 CL0072