Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0388 ATGAATCTTTGGACCGACGATAACTCCTCCGTCATGGACTCTTTCATAGGCTCCGATCTATCTTCTCTCTGGCCTCCTCAGCCATCCTCTGCTTCCACGACTACTACCACTGGAACTGAACCCACCAAGGCTTTCTCTCAAAACCAGCTTTCGGTTTGCATCTTCAATCAGGAGACTCTCCAGCAACGTCTCCAGGCGCTGATTGAAAAAGCCAGCGAGAGCTGGACCTACGCTATTTTCTGGCAATCTTCTTTTGATTACTCGGGAGCCTCCGTGTTGGGTTGGGGTGATGGCTACTACAAAGGCGAGGAGGATAAAGGAAAGGGGAAGGCCAAAATGACGGCGTCTTCCGCAGCCGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTGAATTCACTAATATCCGGGTCGTCGTCGTCCTCCCCGGATGACGCCGTAGACGAAGAAGTAACAGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGGCAGGCGTTCCTCAATTCGAGCCCTGTTTGGGTCGCCGGTTCCGAGCGGTTGGCAGCTTCACCATGCGAGAGGGCGAGGCAGGGTCAGGTGTTCGGGCTTCAGACTTTGGTCTGTATACCGTCGGCGAGTGGGGTGGTCGAACTAGGCTCAACGGAGCTGATATTTCAGAACTCTGATCTGATGAATAAGGTCAGGGATTTGTTCAATTTCAATAGCACCGAAGCGAGTTCTTTGTGGCCGTCAAATGCTTCAAATGCGGCTGATCAGGGTGAGAACGACCCTTCTTCACTCTGGCTCAACGATCCTTCTGCAGTTGAAATTAGGGATTCGGTGACTACTGTTGCGCCCAATTCAGTGCCCAGTTCTACCAACAGTCATAACAATAATCCGAAGCCGATGCAGTTAGATACAAGAGGTTCCACGACTTTAGCTGAGATCCCAAGTTCCGTTCATATCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGGGTCTTTTCACAGGAATTGAACTTTTCTGACTATGGATTGGACGCAAACGGCGTGAAAAACGGTCAGTCTCAGTTCAATGCTGAGGAGAAGAAGAGGAGGTCGCCTACGTCTAGGGGCAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGTTGTTTTTCCTGCTTCAAATATGAAGACCGCCGGCGGTGATTCCGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGACAGTAAAGTGGCCGAACCAGAGAAAAAACCTCGGAAGAGAGGGCGAAAGCCCGCAAATGGCAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTGAATCAACGGTTCTATGCGCTTCGTGCTGTGGTTCCAACCGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATATCTTACATCTCTGAGCTCAAGTCGAAGCTTGAGAGAATGGAATCAGACAAGAACGAATTGCAGGACCAATTGGATTCTGTGAAGAAGGAAATCGATCTAGCGCACAAAGGTTCAGCGCCACCTCCACCGGAGAAAGAACCAAATCCGTCCAATCGTCACGCTAACAAGACAACTGAATTGGATATCGACGTGAAGATTATAGGTTGGGATGCGATGATCCGGATTCAATGCAGCAGGAAGAACCACCCAGCAGCAAGTCATAATTTGTTGGATGGGTCTACGACTTTGACCCCACCCACATTGACAATGATAATAACTGTCGAGATGTTGCGTAAGAATATGGAAAATACGAATCAAAGGATTGACTCCTATAGGGAGCATAATCTCCCTGAACGCGCTGCCAAGCTGCGAGCCCTGATAGCGAGAAGCTGGTCCGGGGCAATGGTTTCGCCGGACGACAGCCACCAACAATGTCAAGATCAACAGAAGAAGATGAGAGGTCCTTTGGCCAAGATCAAGGCCGACCATCGACGGATTCATAGCGCCAGTGACGTGGACTTTTCTGATGGCCCTGAGCCGAGGGAATTCCGGGTTTTGCTTCGCTTGGACTCGTGCTGGGTATACGGTAGATCTTTAAAGGGGAATCCTTCTGGCTTCTCAGTTCTTTTGGATTGGGTTAAGCTCGAATACGGTTCCTTGGTGTTGCAAGTTTGGGTTTTGTATACAAAAATGGATAACTCCAAAAACGGGCCTAGTGATCATTTGGGTGTGAACAAAATGGGAAAAAATATAAGGAAAAGCCCACTCCACCAGCCTAATTTTGGTAATAATGCTTCTAGGCAGCAGCCTCAACCTCAGGTATACAATATAAGTAAGAACGATTTCCGAGACATTGTCCAGCAGCTTACTGGATCGCCTTCACACTCACAGGATCCTCCTCCGAGACCTCCTCACCATCCACCAAAACCACAGAGCAATCGGTTGCAGAAGATAAGACCCCCACCATTAACACCCATCAACAGGCACCCCATGCGTCCGCCAATGCCGGTCCCTGCAGCCCCTCCCCCTGTCCCTTACAATAATAGCTTGCCCAGGCCTGCTCAATTAGGGCAACCATCACCAACTCCTATGCATCCATTAAATCCTGGGGACATGATTTGGTCTAATCCTACTGAGTCACCCATCTCAGCTTACATGCGCTACCTTCAAAGTTCAATGTTGGATCCCAGTCCAAAGGGTGGCCAACCTTATCCTCAGCCACAGCCAAACCTTCCATTACAAGGGCCAGGCAATTTTCAGCCCCGACCACCACCACCTGCTTTACTTCCTAATCCTTCTGGGCCTACGCTCCCATTTCCTAGATTTAATGGTCCTATTCCACCCGTGAATGCTGCTAACCCACCTATGCCACCAAATATTCCTTCCCCACAACCAAATGGTCCTCCACCTTTACCTTCTCCAACCTCCCAGTTCCTCTTGCCATCCCCTACTGGTTTCTTGAATATGCTATCCCCAAGGTCACCTTATCCACTTTTATCGCCTGGAATGCTGTTTCCATCTCCTCTTACGCCCAACTTTCCATTCTCACCAATGGCGCAGTCAGGGATTTTAGGCCCAGGGCCCCAACCTCCACCTTCTCCGGGCCTTTCATTTCCATTGTCTCCTTCAGGCTTTTTCCCTATCTCAAGTCCTAGGTGGAGAGACCATTAG 3186 0.4987 MNLWTDDNSSVMDSFIGSDLSSLWPPQPSSASTTTTTGTEPTKAFSQNQLSVCIFNQETLQQRLQALIEKASESWTYAIFWQSSFDYSGASVLGWGDGYYKGEEDKGKGKAKMTASSAAEQEHRKKVLRELNSLISGSSSSSPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSERLAASPCERARQGQVFGLQTLVCIPSASGVVELGSTELIFQNSDLMNKVRDLFNFNSTEASSLWPSNASNAADQGENDPSSLWLNDPSAVEIRDSVTTVAPNSVPSSTNSHNNNPKPMQLDTRGSTTLAEIPSSVHIPNAHHSHQQQRQQQRHSLNQGVFSQELNFSDYGLDANGVKNGQSQFNAEEKKRRSPTSRGSNDEGMLSFTSGVVFPASNMKTAGGDSDHSDLEASVIKEVDSKVAEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPTVSKMDKASLLGDAISYISELKSKLERMESDKNELQDQLDSVKKEIDLAHKGSAPPPPEKEPNPSNRHANKTTELDIDVKIIGWDAMIRIQCSRKNHPAASHNLLDGSTTLTPPTLTMIITVEMLRKNMENTNQRIDSYREHNLPERAAKLRALIARSWSGAMVSPDDSHQQCQDQQKKMRGPLAKIKADHRRIHSASDVDFSDGPEPREFRVLLRLDSCWVYGRSLKGNPSGFSVLLDWVKLEYGSLVLQVWVLYTKMDNSKNGPSDHLGVNKMGKNIRKSPLHQPNFGNNASRQQPQPQVYNISKNDFRDIVQQLTGSPSHSQDPPPRPPHHPPKPQSNRLQKIRPPPLTPINRHPMRPPMPVPAAPPPVPYNNSLPRPAQLGQPSPTPMHPLNPGDMIWSNPTESPISAYMRYLQSSMLDPSPKGGQPYPQPQPNLPLQGPGNFQPRPPPPALLPNPSGPTLPFPRFNGPIPPVNAANPPMPPNIPSPQPNGPPPLPSPTSQFLLPSPTGFLNMLSPRSPYPLLSPGMLFPSPLTPNFPFSPMAQSGILGPGPQPPPSPGLSFPLSPSGFFPISSPRWRDH 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0388 1061 MobiDBLite consensus disorder prediction 22 42 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 360 395 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 526 549 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 897 1061 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 255 273 - -
Lele56g0388 1061 Coils Coil 495 529 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 828 854 - -
Lele56g0388 1061 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 449 498 IPR011598 GO:0046983
Lele56g0388 1061 MobiDBLite consensus disorder prediction 424 460 - -
Lele56g0388 1061 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 452 517 IPR036638 GO:0046983
Lele56g0388 1061 SMART finulus 455 504 IPR011598 GO:0046983
Lele56g0388 1061 MobiDBLite consensus disorder prediction 1029 1043 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 740 774 - -
Lele56g0388 1061 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 242 IPR025610 -
Lele56g0388 1061 Gene3D - 441 529 IPR036638 GO:0046983
Lele56g0388 1061 MobiDBLite consensus disorder prediction 287 311 - -
Lele56g0388 1061 CDD bHLH_AtAIB_like 446 522 - -
Lele56g0388 1061 PANTHER MYC 46 578 IPR045084 GO:0003700|GO:0006355
Lele56g0388 1061 MobiDBLite consensus disorder prediction 801 815 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 1004 1018 - -
Lele56g0388 1061 Pfam Helix-loop-helix DNA-binding domain 453 498 IPR011598 GO:0046983
Lele56g0388 1061 Coils Coil 599 619 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 255 274 - -
Lele56g0388 1061 Pfam VQ motif 775 801 IPR008889 -
Lele56g0388 1061 FunFam Transcription factor bHLH13 442 516 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 905 982 - -
Lele56g0388 1061 PRINTS Proline rich extensin signature 807 819 - -
Lele56g0388 1061 PRINTS Proline rich extensin signature 896 917 - -
Lele56g0388 1061 PRINTS Proline rich extensin signature 959 984 - -
Lele56g0388 1061 PRINTS Proline rich extensin signature 924 940 - -
Lele56g0388 1061 PRINTS Proline rich extensin signature 827 843 - -
Lele56g0388 1061 MobiDBLite consensus disorder prediction 794 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0388 Lele-ChrLele56 2913302 2921777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0388 2 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 53.141 4.30e-177 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele56g0388 bHLH-MYC_N 1.2e-54 CL0161