Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0381 ATGGCTTCTCTTGGGAACCCCAGAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGCTTCTGTAGTCTCTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTACCTGAAGAAAATTCAAACCCTAACTTTTCACCTCTGGTTATAGCAGTCATCGGAGTCTTGGCCAGTGCTCTTCTTCTTGTTAGCTACTACACCATAATCTCCAGGTACTGTGGCAACCCAGAATCTTCAGACACACAGAATCATCACGACCCTTCAAATGATGAATTAGAACAGTATTTTCACGATCCTTCACTTCACGAGCCATGGCGCTCGTCACCCAATGGTCTCGACGAGGCTCTGATAAAGTCCATCACAGTTTGTAAGTTCAAGAAAGAAGATGGGTTGGTGACAGTAGCAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGACGATGAAAGTATCAGGCTTTTGCCTAAGTGCAGCCATGCTTTTCACATCCCTTGTATTGATACGTGGCTCAAATCTCACTCCTCTTGCCCTCTCTGTCGAGCTAGTATCTTCACCTTCAACGCTTCAGCCCTTGTGGCGTCTGATAATTCCATGGTACAGAATTCAACTTTCCAGGAAAATCAACCTGGGAATGAAAACAATCAAGTGGTGGGTTTAGCAGTGGAAGAACAAGAACAAAGTGAAGAAACCATACAACGTGGTACAGCTCCGAAGCCTGCTACATTGCGTGCTATGAGTGATTTGGGGAATTTACAGGGAAGACATAGTGTGATTGAGATTAAAGATGAAGGGTACGTTGACGTTGGGCCCTTTAGAAGGTCAATTTCTATGGACCATTCCTTTGAAAGTCGGAACAGAGTAGGAGAAAAAGGCTCTGTTAATGGAGCAGGTTCATCGAAGAGATGA 927 0.4444 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEENSNPNFSPLVIAVIGVLASALLLVSYYTIISRYCGNPESSDTQNHHDPSNDELEQYFHDPSLHEPWRSSPNGLDEALIKSITVCKFKKEDGLVTVADCSVCLSEFKDDESIRLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIFTFNASALVASDNSMVQNSTFQENQPGNENNQVVGLAVEEQEQSEETIQRGTAPKPATLRAMSDLGNLQGRHSVIEIKDEGYVDVGPFRRSISMDHSFESRNRVGEKGSVNGAGSSKR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0381 308 MobiDBLite consensus disorder prediction 284 308 - -
Lele56g0381 308 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Lele56g0381 308 FunFam RING-H2 finger protein ATL54 120 193 - -
Lele56g0381 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 194 IPR013083 -
Lele56g0381 308 SMART ring_2 145 186 IPR001841 -
Lele56g0381 308 PANTHER RING-H2 FINGER PROTEIN ATL16 41 289 IPR044600 GO:0016567|GO:0016740
Lele56g0381 308 SUPERFAMILY RING/U-box 144 193 - -
Lele56g0381 308 CDD RING-H2_PA-TM-RING 144 187 - -
Lele56g0381 308 Pfam Ring finger domain 144 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0381 Lele-ChrLele56 2852911 2853837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0381 1 286 C3H Transcription Factor Family AT3G03550 44.040 1.41e-73 228