Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0374 ATGGGTAGGGGCCCGTGTTGTGAGGAGACTGGTGTGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTCATCGCTTATATCAGTAAACATGGCAGTGGAAGTTGGAGAACACTTCCAAAGCATGCAGGCCTCAACAGATGCGGTAAGAGTTGCAGGCTTCGGTGGACCAATTATCTTAAGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGAAATTGATCATCAACCTTCATTCTGTTCTTGGCAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGAACCGATAATGAAATTAAGAATTTCTGGAACACAAGTATAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGAAACTCACAAGCCAAGAACTGACTTGAAGCATCTCTTGAATCTCTCGCAGTTGCTTGGCATGCCTAATAATAATAACAACTTGATGAGCCATGCGGGTCTGCAGGGTTTACTGCATCCAGATTTGACTCATCAGTTAGTCCAAATCCAACTTCTGCAGAATCTGTTGCAGCTTATGAATGGCAATTCATCGTTGATCAGTAACATGCAGAGTAATCTCCCACTCTTGGGCAATCACATTTTGATAAATAACCCAGTAATGGAAACAGATACAAATGGTCTAAACAGTGCTCTATTTCCTTCAGCTCCAAGTGAATCCCGCCAGGATGTTTCAGAATCATGGACAGACCAAGAAGGAGCGTCGTCAGATCAACAAGTTCTGGGTCTTAATAATAGTATCAGCAGAACTACATCACAAGAAATGAATATTCAAGCTGAAAATTCATTTCCTGCAACCAGTTCAGGCAACTTCAACCAGCAGTCACCTCCATCCACAGTCTTTGATCCTTGGGAAAAGCTCTTGGAAGATGATGATGCAAGCGATTCCTATTGGAAAGAACTTTTAGAGTAA 939 0.4302 MGRGPCCEETGVKKGPWTPEEDEKLIAYISKHGSGSWRTLPKHAGLNRCGKSCRLRWTNYLKPDIKRGKFTEEEEKLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTSIRKKLLQMGIDPETHKPRTDLKHLLNLSQLLGMPNNNNNLMSHAGLQGLLHPDLTHQLVQIQLLQNLLQLMNGNSSLISNMQSNLPLLGNHILINNPVMETDTNGLNSALFPSAPSESRQDVSESWTDQEGASSDQQVLGLNNSISRTTSQEMNIQAENSFPATSSGNFNQQSPPSTVFDPWEKLLEDDDASDSYWKELLE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0374 312 CDD SANT 69 110 IPR001005 -
Lele56g0374 312 MobiDBLite consensus disorder prediction 216 291 - -
Lele56g0374 312 FunFam Transcription factor MYB39 69 130 - -
Lele56g0374 312 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele56g0374 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele56g0374 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele56g0374 312 MobiDBLite consensus disorder prediction 216 289 - -
Lele56g0374 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele56g0374 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele56g0374 312 SMART sant 66 114 IPR001005 -
Lele56g0374 312 SMART sant 13 63 IPR001005 -
Lele56g0374 312 FunFam MYB-related transcription factor 13 66 - -
Lele56g0374 312 Gene3D - 68 135 - -
Lele56g0374 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele56g0374 312 Gene3D - 12 67 - -
Lele56g0374 312 CDD SANT 16 61 IPR001005 -
Lele56g0374 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Lele56g0374 312 PANTHER F14D16.11-RELATED 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0374 Lele-ChrLele56 2827041 2828074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0374 1 312 MYB Transcription Factor Family AT5G16770 47.917 1.40e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele56g0374 Myb_DNA-binding 3.5e-17 CL0123