Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0368 ATGTCTGTAGCAGGGAGTCTAGGGAGAAGCGAGTTGAAAATCAATTGGACTCTAGTCTTTATGTACAAAACTGAAACTGAAAAGGGTCTTAACAATCATATCATGAGCTTTCAGGATATCGAAGCTGGCCGGCCCTTCGCTCAGCGGCGAAACCTCGGCAATCCCAACCAAGATCCTACCCAGGCCGTGGCTTCCGGTATCTTTCAGATCAACACCGCTGTTTCCACGTTTCAGAGGCTCGTCAATACCCTTGGAACCCCGAAAGACACGCTAGAGCTGCGCGAGAAATTGCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGACACATCTGCCAAACTCAAGCAAGCTAGTGAAATAGATCACCATGTTGAAGTTAGTGCAAGTAAGAAGATAACAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTTCTGAAAGAATTTCAGAAGGCACAGCAGCTTGCAGCCACAAGGGAAACAACCTACACTCCTTTCGTTTCACAAGCAAGTCTTCCTTCCAGTTATACAGCCAGCGAGGAGGATGTTAGTTCTGATAAGACTTCAGAACAGCGTGCTCTTCTTGTGGAATCCAGAAGGCAAGAGGTGTTATTATTGGATAATGAGATTGCCTTCAATGAAGCTATAATTGAGGAACGAGAGCATGGCATTCAAGAAATCCAACAACAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCCATGATTGATGATATTGGATCCAATATTGAAGCCTCCCATGCGGCAACTTCAGAAGCAAAAACTCAACTTGTGAAAGCTGCCAAGACCCAAAGATCAAATTCGTCTCTGACGTGCTTGCTCTTGGTGATATTTGGGGTCGTGCTTCTCATCGTGATCATAGTTCTTGCTGCCTAG 924 0.4448 MSVAGSLGRSELKINWTLVFMYKTETEKGLNNHIMSFQDIEAGRPFAQRRNLGNPNQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHVEVSASKKITDAKLAKDFQAVLKEFQKAQQLAATRETTYTPFVSQASLPSSYTASEEDVSSDKTSEQRALLVESRRQEVLLLDNEIAFNEAIIEEREHGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEASHAATSEAKTQLVKAAKTQRSNSSLTCLLLVIFGVVLLIVIIVLAA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0368 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Lele56g0368 307 SUPERFAMILY t-snare proteins 57 269 IPR010989 GO:0016020|GO:0016192
Lele56g0368 307 SMART SynN_4 47 161 IPR006011 GO:0016020
Lele56g0368 307 Pfam SNARE domain 251 302 IPR000727 -
Lele56g0368 307 SMART tSNARE_6 209 276 IPR000727 -
Lele56g0368 307 ProSitePatterns Syntaxin / epimorphin family signature. 220 259 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele56g0368 307 PANTHER SYNTAXIN 60 298 IPR045242 -
Lele56g0368 307 CDD SNARE_Qa 217 275 - -
Lele56g0368 307 Gene3D - 53 169 - -
Lele56g0368 307 Gene3D - 189 307 - -
Lele56g0368 307 FunFam Syntaxin-22 like 54 167 - -
Lele56g0368 307 FunFam Syntaxin-22 like 207 307 - -
Lele56g0368 307 CDD SynN 57 191 IPR006011 GO:0016020
Lele56g0368 307 Pfam Syntaxin-like protein 64 163 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0368 Lele-ChrLele56 2795924 2801528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0368 35 295 SNARE and Associated Proteins AT5G46860 77.778 3.36e-142 400