Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0364 ATGAGCCAAGCCGTGACCGAGTGGGCCGACCAAACGACAAGCTGCTTTGGATCTCCCTGTGGTCTGGTTTCAGCCTCGTGCTCGGCTTTCTGCGAGAATGTGGCGAGTCTAGTTGTTGTCGAAGGCTATCTTTTACTCTATAAAATCAAGGATCGTGATCTAGGGTTTGATTCTGGGATTTGGATTCAGTTTTGTCATTGTTTTTGTGATTTCTTGACCAAGTGGCCGAAGACTGAGGCCTACAGGGAGCTACCTCGGGATGAAATGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAATGTATTAGAAACTTCGAAGCGTAAAAGGCTTCACCGAGCAAAATCTTCAACTGCCGATAAGACAAGTGTTCCTAATATGATGACAAGAAGCGGAGGAGATGCTTTAAGGGCTTCGTCATCATGTGGTATGAGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACATGAGTGATCTAGAATGGACTGAGAAAATTTCCGAGTGTCCTGTGTACTGCCCAACAAAGGAGGAATTTGAGGACCCTTTGGTTTATTTGCAAAAGATAAGTCCTGTGGCTTCAAGATATGGTATATGCAAGATTATTTCTCCATTGAGTGCTTCAGTTCCTGCTGGAGTTGTGTTAATGAAGGAGAAAGCAGGATTTAAGTTTGCAACTAGAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCACGTAGATATTGCAGTGCTGGATGTCTTCCTGCCTCATTTTTGGAAAAGGAGTTTTGGCATGAAATTAGCTGCGGAAAGATGGAAAGTGTAGAATACGCATGTGACGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAGTGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAAGCTTTCTCGGCTGCCCAAATCCATTTTGCGGCTCTTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTATTTGTACAGTATTAATTATCATCATTGTGGGGCACCAAAAACTTGGTACGGAATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAGAGAACATGTGTATACTAATGATATTCTGTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTGCCGGTCCATAAAGCTGTTCAGAAACCGGGAGAGTTTATTGTTACCTTTCCTAGAGCGTATCATGCTGGTTTTAGTCATGGTTTTAACTGTGGTGAAGCAGTGAATTTTGCCATTGGTGATTGGTTTCCTTTAGGGGCCACTGCCAGCAGGCGATATGCACATCTAAACAGGGTTCCTCTGCTACCTCACGAAGAACTTTTATGCAAAGAAGCAATTCTCCTCTATACAAGTTTAGAACTTGAAGACTCAGATTTTCCTTCCGCAGATTCGATGTTTCATAATAGCATCAAGATCTCTTTTGCTAATTTGATGCGCTTCCAGCATTGTGCTCGCTGGTTCTTAATTAAATCAGGGGTGTGCACAAATGTTTCTTCACACTCCCATGGCTCAATTCTCTGTAGTCTCTGCAAACGTGACTGCTATGTAGCATATGTTGACTGCGACTGTCAGATGCATCCAGCGTGTCTTCGCCATGATATCGAATCTCTTGACTTCACCTGTGGGAGTAAACACACTCTTTGCTTGAGGGAGGATATTGAAGATATGGAAGCTGCGGCCAAGAGGTTTGAGCAGGAAGATGGTATATTGGATGAAATAATTAAGCAGATCAAGGTTGACAATAACATGTATTCCTATCCCTTGTCAAATATGTTTCACGGAGCTGAGGCCGATGGATATACCCCTTATTGTGAGATAAAACTTGATTCTGTTATTGAATCTTCTTACTATGGCTCAGATCAGTTAATGAATATTCAAGAGTGTGCGATTCAAAGTCAATGGGCTTTGAGGCATTGCTCAGGATCAGAATATCGCAAATCCGAAGTGTCTGATGTTTCCTTCTTTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCGGACCCTCTTGAGAGTTATTCTTCTACTATTAAAAATGACGAGGGGCGTGCAAACTCAGGCATTGTTAATTCTGAAGAGCTTTGTGAAAGAGTGTCCAATGGTGCATGTGAATCTTTAGTATCCCCTACACGGAATCACGAGAGCTCGATTAAACCTCAGGGTGGCGATCTTAATAGATTAGAGATGAAATCCATGGTGAATAATGACACTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTCTTTGAAGGCAGAGAGGAGAAATGGAAATGATGGGATGTGTCCCAAGCATTCTGACCACCAGGGACTCAAACGATTGAAGAAAAACTCGGAAGAAACAAGAAGTGGGCAACTAATAGATTACAGCAAAAGCAGTGAATCAGTTTCCAACAAGTGGAGGCAACCAGCAAATCACAAAACTGATAGTGAAAGCTGTAAGAGGGAAAGATATGCTAAGGCTAATAATGGCATTCCCATTTCCATAAGGTACAAGAAAGTAGGAAATAACGAGGACCTGAGTGGACAAGGAGATCACCACCAGAGAAATTGGATGCAACAGAGTATGATGGAACCATCATCCGCCACAGAGATCGGGATTGGACCGAAGCGGCTTAAAGTGCGAGGCCCTTCATTCCTGAGTTTATAG 2850 0.4277 MSQAVTEWADQTTSCFGSPCGLVSASCSAFCENVASLVVVEGYLLLYKIKDRDLGFDSGIWIQFCHCFCDFLTKWPKTEAYRELPRDEMVEGRVCLPKEARNVLETSKRKRLHRAKSSTADKTSVPNMMTRSGGDALRASSSCGMRLHGNADAFSKRKVDKFDMSDLEWTEKISECPVYCPTKEEFEDPLVYLQKISPVASRYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPASFLEKEFWHEISCGKMESVEYACDVDGSAFSSSPSDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGIPGHAALEFERVVREHVYTNDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVHKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGATASRRYAHLNRVPLLPHEELLCKEAILLYTSLELEDSDFPSADSMFHNSIKISFANLMRFQHCARWFLIKSGVCTNVSSHSHGSILCSLCKRDCYVAYVDCDCQMHPACLRHDIESLDFTCGSKHTLCLREDIEDMEAAAKRFEQEDGILDEIIKQIKVDNNMYSYPLSNMFHGAEADGYTPYCEIKLDSVIESSYYGSDQLMNIQECAIQSQWALRHCSGSEYRKSEVSDVSFFSAASALCSLSDPLESYSSTIKNDEGRANSGIVNSEELCERVSNGACESLVSPTRNHESSIKPQGGDLNRLEMKSMVNNDTDDSDSEIFRVKRPSSLKAERRNGNDGMCPKHSDHQGLKRLKKNSEETRSGQLIDYSKSSESVSNKWRQPANHKTDSESCKRERYAKANNGIPISIRYKKVGNNEDLSGQGDHHQRNWMQQSMMEPSSATEIGIGPKRLKVRGPSFLSL 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0364 949 MobiDBLite consensus disorder prediction 770 881 - -
Lele56g0364 949 MobiDBLite consensus disorder prediction 796 849 - -
Lele56g0364 949 Pfam jmjN domain 177 209 IPR003349 -
Lele56g0364 949 Gene3D Cupin 176 532 - -
Lele56g0364 949 Pfam C5HC2 zinc finger 573 624 IPR004198 -
Lele56g0364 949 SMART cupin_9 323 493 IPR003347 -
Lele56g0364 949 FunFam Lysine-specific demethylase isoform A 171 520 - -
Lele56g0364 949 SUPERFAMILY Clavaminate synthase-like 254 510 - -
Lele56g0364 949 PANTHER LYSINE-SPECIFIC DEMETHYLASE 168 883 - -
Lele56g0364 949 MobiDBLite consensus disorder prediction 850 870 - -
Lele56g0364 949 Coils Coil 612 632 - -
Lele56g0364 949 ProSiteProfiles JmjN domain profile. 176 217 IPR003349 -
Lele56g0364 949 SMART JmjN_1 175 216 IPR003349 -
Lele56g0364 949 ProSiteProfiles JmjC domain profile. 323 493 IPR003347 -
Lele56g0364 949 Pfam JmjC domain, hydroxylase 353 476 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0364 Lele-ChrLele56 2764823 2772450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0364 173 643 JUMONJI Transcription Factor Family AT2G34880 31.949 9.94e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele56g0364 JmjC 6.1e-39 CL0029