Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0362 ATGGAGCTATTTCCAGCACATCCTGATTTGTCTTTGCAGATTAGTCCTCCTAACACAAAACCCACATCGGGATGGAGAAGTAGCGGGACACATCATCATCAAGCTCAGCTTGATTTGGGTTTCTGGAAGAGAGCTTTGGAAACCAGAAGCTCATTGTTTGCTTCTTCTTCAATGCCTAAAACAACTGACACTACTGACTTCTTTGACCTTACACTCTGTAATAATAACCCAGCAGCTCCTTCTTCTACTACTACATTCACAACGCCTTCTTCAATTTCTTCCTCCTCAGATCATATCCGCTTCCAAAACGCTCCGTTTCAATACCCACAAGACCTGGGATTTCTCAGACCCATCCGAGGAATCCCAGTGTACCAGAACCTTCCTCCTCCTCCTCATCCAGCTGCAACTACGACTCTTCCTTCTCCTTTCTCTCAAGTTCATCAGAATCTGCAGGATGCTTCTGTTTCAACTGCGGTGAACAACACGACGGCCACCACCCCTTTTCCTTTTCACCACCAGCATCATCATATCCAAGGTTTGATGAGGTCGAGGTTCTTGTCTAATCGTTTCCCTACCAAACGCAGCATGAGAGCTCCCAGGATGCGTTGGACTACCACCCTCCATGCTCGCTTTGTTCATGCCGTTGAGCTTTTGGGTGGCCACGAGAGGGCTACACCCAAAGCCGTTCTCGAGCTAATGGATGTGAAGGAACTTACTTTAGCCCACGTTAAATCTCATTTACAGATGTATCGGACGGTGAAAACCACAGATAGAGCAGCAGCTTCTTCTACAGGCCAATCAGATGGGTATGATAATGGATCATCTGGGGATACTTCTGAAGATTTGATGTTCGACATGAACAATAATCTGAGAAGATCCGATCTATCTCCTAAGCAGGGAAGACAAAGTTTTCATCAAGAAAAGGAATATCATCATGGCCTTTGGAGCAACTCTTCGAGAGAAGCTTGGTTGCATGGGAAGCCAAAGGAGATTGATTCTGTTGGAAACAACAATGTTAGTTCTCTTGAGAAAGAGAGAATATCAGATGGAAGCTCATCGTCAAACATTTCAGGATCAAGCCCTGAGAAGCCTAATCTTGATTTGGAGTTCACTTTGGGACAGCCATTAATATGA 1134 0.4515 MELFPAHPDLSLQISPPNTKPTSGWRSSGTHHHQAQLDLGFWKRALETRSSLFASSSMPKTTDTTDFFDLTLCNNNPAAPSSTTTFTTPSSISSSSDHIRFQNAPFQYPQDLGFLRPIRGIPVYQNLPPPPHPAATTTLPSPFSQVHQNLQDASVSTAVNNTTATTPFPFHHQHHHIQGLMRSRFLSNRFPTKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKAVLELMDVKELTLAHVKSHLQMYRTVKTTDRAAASSTGQSDGYDNGSSGDTSEDLMFDMNNNLRRSDLSPKQGRQSFHQEKEYHHGLWSNSSREAWLHGKPKEIDSVGNNNVSSLEKERISDGSSSSNISGSSPEKPNLDLEFTLGQPLI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0362 377 MobiDBLite consensus disorder prediction 1 30 - -
Lele56g0362 377 Gene3D - 198 255 - -
Lele56g0362 377 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 375 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele56g0362 377 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Lele56g0362 377 SUPERFAMILY Homeodomain-like 196 252 IPR009057 -
Lele56g0362 377 MobiDBLite consensus disorder prediction 328 377 - -
Lele56g0362 377 Pfam Myb-like DNA-binding domain 200 251 IPR001005 -
Lele56g0362 377 MobiDBLite consensus disorder prediction 257 312 - -
Lele56g0362 377 MobiDBLite consensus disorder prediction 12 30 - -
Lele56g0362 377 FunFam Myb family transcription factor 197 255 - -
Lele56g0362 377 MobiDBLite consensus disorder prediction 257 300 - -
Lele56g0362 377 MobiDBLite consensus disorder prediction 333 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0362 Lele-ChrLele56 2742732 2746663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0362 1 375 G2-like Transcription Factor Family AT4G17695 37.173 1.14e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele56g0362 Myb_DNA-binding 2e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1114 53 20221034 20225506 Lele56g0362 56 2742732 2746663 hybridization
Lele54g1082 54 16760473 16764410 Lele56g0362 56 2742732 2746663 hybridization