Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0343 ATGAATAAGCCAATAGTAGTTTGCTTAAGCCATACATCACCACGCTATTTACTAAAAACCCAGACCTCATCGTGGTTCTATTTGGCGCTGGTTCGCGCGGCTCTGGGATCTGCGGGAGTTGTTTACACTTTCAGGCTTTCAGCTTCAACCATGGGCAAGAAACTTCATGATGACGCCAGAGTCAGCGAGCCAGTAGCCGAGGAAGCCCCCGACTTCTCGGCAATCGAAGCAGAGAAGAAGAAAAAGAAGAAGAAAGATAAGCGAAACGAAGATAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGGTCCAGGATAGCACAGAACCGAAAACGAAGAAGAGTAAGAAGTCGAAAAAAAGCTCGGAGGAAACCGCGACTGTCGAAACAAATGACGCCGAGAACGGTGGAGAGGGCGACTCGGTGAGAGATGGCCACGTTGTGGTTACTGGAACGAATATTAAGGATGAGAAGTATGCGCCCACCAAGGCTTTCTCCGAATCGGGGCTTCCAAAGGAAGTCTTGGAATGCTGCAAAAGTTTTGAAAAGCCGTCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTGTTGAATGGTCGTGATTTAATTGGCATTGCTGCTACTGGATCAGGAAAAACATTAGCTTTTGGAATACCGGCTATGATGCATGTTATGAGCAAGCGCAAGAAGAAAGCGTCAAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCTACCAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGGTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCTTCGTTAAAATCTGGTGTTGACATCGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTTGTTCTTTGAAAGAGGTTTCGTTTGTGGTGCTTGATGAAGCTGATAGAATGCTCGACATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCATAACTTAGCTCAAGAGTTCATGGATCCTAACCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGATGATCGTGCGCGAGATAAACGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCTCAGAGGAATAGAGTATTGGTTTTTGTCTTATACAAATTGGAAGCCACTCGGGTCGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCTATACATGGGGACAAGTCACAATATGAACGTACGAAGTCACTATCGTTATTCAAGAATGGAAGCTGCCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCGGATGTCGAAGTTGTGATCAACTACAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGAGAACAGGACGAGCTGGGAAGAAAGGTGTTTCGCATACGTTCTTCACGCAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGATGATCTCTTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTCAAGGAGATTTCTGCTGATGCTCCGAAGTCAAAGAAGACAACATTTGACGACTCTGACGAAGATTAA 1740 0.454 MNKPIVVCLSHTSPRYLLKTQTSSWFYLALVRAALGSAGVVYTFRLSASTMGKKLHDDARVSEPVAEEAPDFSAIEAEKKKKKKKDKRNEDSPKRKLEEVEVQDSTEPKTKKSKKSKKSSEETATVETNDAENGGEGDSVRDGHVVVTGTNIKDEKYAPTKAFSESGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVMSKRKKKASKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGVDIVIGTPGRIKDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHNLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHQGGWKVVSIHGDKSQYERTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPDDLLKFGTHVKKKESKLYGAHFKEISADAPKSKKTTFDDSDED 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0343 579 MobiDBLite consensus disorder prediction 72 125 - -
Lele56g0343 579 Pfam DEAD/DEAH box helicase 184 353 IPR011545 GO:0003676|GO:0005524
Lele56g0343 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 367 IPR014001 -
Lele56g0343 579 FunFam ATP-dependent RNA helicase RhlB 370 547 - -
Lele56g0343 579 MobiDBLite consensus disorder prediction 54 143 - -
Lele56g0343 579 Gene3D - 75 370 IPR027417 -
Lele56g0343 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 543 IPR001650 -
Lele56g0343 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 517 IPR027417 -
Lele56g0343 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 161 187 IPR014014 GO:0003724
Lele56g0343 579 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 108 539 - -
Lele56g0343 579 SMART helicmild6 423 504 IPR001650 -
Lele56g0343 579 CDD DEADc 179 368 - -
Lele56g0343 579 Pfam Helicase conserved C-terminal domain 395 504 IPR001650 -
Lele56g0343 579 CDD SF2_C_DEAD 381 513 - -
Lele56g0343 579 Gene3D - 371 546 IPR027417 -
Lele56g0343 579 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 313 321 IPR000629 -
Lele56g0343 579 SMART ultradead3 178 384 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0343 Lele-ChrLele56 2610870 2615293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0343 159 533 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 1.02e-54 189