Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0341 ATGGCAGCTTCTTGCGCAGTTTACACAACAACACAATCTCTCAACACAAAAAGCTCCATCTCATCTCCATCAAAATCACATTTGGGTTATTTTGGCCAGAAACATGAGCAGCTATTTATCTTCAGGGGAAGAACAAGAAGAAGAAGCTGCAGTCCATGTCTGATAACATGTGGTGCAGTGGCAGATCATGATCAGACGGTTGTGATTGGTCTTGCTGCAGATTCAGGCTGTGGGAAGAGCACATTCATGAGAAGACTAACAAGCGTGTTTGGAGGAACAGCAGAACCACCAAAAGGAGGGAATCCAGATTCCAACACTATCATTAGTGACACAACAACAGTTATTTGCTTAGATGATTATCATTCACTGGACAGAAATGGAAGAAAAGAAAAAGGAGTCACAGCACTAGATCCAAGAGCCAACAATTTTGATCTCATGTATGAACAAGTCAAGGCAATTAAGGATGGAATTGCTGTGGAAAAACCCATTTATAATCATGTCACTGGTCTCTTGGATCCTCCTGAGCTCATAAAGCCTCCCAAAATCTTGGTCATTGAAGGTTTGCATCCAATGTTTGATTCTCGGGTGAGAGAACTGTTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGCCTTGAAAGCATCAAAGCTAGCATTGAAGCTCGGAAGCCTGATTTTGAAGCCTTTATTGATCCTCAGAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACTCAGCTCATTCCAAATGATAATGAAGGAAAGATTTTAAGAGTGAGGTTAATACAGAAAGAAGGGGTTAGGCATTTTAACCCTACGTACTTGTTTGACGAAGGATCTACCATTTCCTGGATACCATGTGGCAGGAAGCTCACTTGCTCTTATCCTGGCATTAAGTTCTTCTATGGACCAGAGACTTACTATGGCAATGAGGTATCAGTTGTGGAGATGGATGGGCCATTTGACAAACTAGATGAACTGATATATGTTGAGAGCCATCTTAGCAACCTCTCAACAAAATTCTATGGAGACCACACAACAGATGTTGAAACATGCTGA 1113 0.4187 MAASCAVYTTTQSLNTKSSISSPSKSHLGYFGQKHEQLFIFRGRTRRRSCSPCLITCGAVADHDQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTIISDTTTVICLDDYHSLDRNGRKEKGVTALDPRANNFDLMYEQVKAIKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAFIDPQKQYADAVIEVLPTQLIPNDNEGKILRVRLIQKEGVRHFNPTYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYYGNEVSVVEMDGPFDKLDELIYVESHLSNLSTKFYGDHTTDVETC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0341 370 ProSitePatterns Phosphoribulokinase signature. 217 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele56g0341 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 336 IPR027417 -
Lele56g0341 370 CDD PRK 68 357 - -
Lele56g0341 370 FunFam Phosphoribulokinase 63 293 - -
Lele56g0341 370 Gene3D - 63 297 IPR027417 -
Lele56g0341 370 Pfam Phosphoribulokinase / Uridine kinase family 68 266 IPR006083 GO:0005524|GO:0016301
Lele56g0341 370 PRINTS Phosphoribulokinase family signature 73 90 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele56g0341 370 PRINTS Phosphoribulokinase family signature 182 200 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele56g0341 370 PRINTS Phosphoribulokinase family signature 235 258 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele56g0341 370 PRINTS Phosphoribulokinase family signature 217 234 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele56g0341 370 PANTHER URIDINE KINASE 64 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0341 Lele-ChrLele56 2598340 2601370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0341 62 258 PRT Gene Family AT1G55810 26.961 1.31e-14 73.2