Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0310 ATGGAGCCCAACGACCTGTTACAGGAGCTTCTAGCCATAGAGGTCGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTAATTGAAAGACAAGAGCAGTTGCATGAGAGAAAATCAGAGCTCAAGGCTATACTAGAAGCATGTGAAGAATCTGGAAACCCGGTCAATGACGGTGCTCCAGGTGCCGTGGAAAATTGGTCTGGGCCATTTGAATGGGATTCTGAAGCAGATGATGTGAGGCTGAATATTTTTGGCATTTCTACATATCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTAGAAGGGATGTTCTGGTGATTATGGCTGCGGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTCCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTAATTCAGGATCAGGTTATGGGTTTAACTGCTTTAGGGATCCCAGCATACATGTTGACATCAACAACAAGTAAGGAAGATGAGAAGTTCATATACAAGGCTCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGCACGTCACACCAGAAAAGATATCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCATGCCGATCGTCTCTCTCTAATTTCCATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAATTTCCTAATGTTCCAATAGTTGCTTTGACTGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATGGAAATGTTGCACATTCCAAGATGTGTCAAATTTGTCAGCACAGTCAACAGACCGAACCTATTTTATATGGTCAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATTGCTGGATTCATTCAAGAATCTTATCCGAATGAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAGGAATGTGAGCAGGTAGCAATGGAATTAAGGGAGAGGGGAATTTCTGCTGATTATTACCATGCGGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCATAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCCCGACAGAGTTCAATGGTTTTCTTCGAAAACACAGGACTGCAGAATTTGTATGACATAGTAAAATATTGTCAGTCCAAAAAAACATGTCGCCGCAGTGCCATTTTCCAGCACTTTGCTGAGCCACCACAAGACTGCAATGGGATGTGTGACAATTGTGCATTCCCAAGCGAGGTGAAAGAACTGGACGTATCCAGCCATGCGAAGCTGATGGTTTCTTTGTTGAAAGATATGCAAGAAAATGATCGGAGATTAACAATGTTACAGTTGGTTGACAAAATGAAAATTAAGCAGAAGGAACTAGATTTTAAGTTGAAGAAAGAGGAAATGAAGCAGCTCATCTTACAGCTTTTACTTGAGCGGGTTTTGAAAGAAGAATTTCAGCATACGGCATATACGACAAATGCGTACGTTGCTGAGGGACCATTGGCCAGGCAAATATTGCTAGGAAAGAAGACTGTCAAGATTGAAATTTCTAGTGAACAGAGAACCAAGGCTGGTGTCAAATCAGTTAAACGTAGCTTTGGTTCCTCTGGTCTGGAGGTAAAACTTGATGAGCTGAGGAAAGAATTGTCCTCCATGAATGGAGGAATACTCCCGCACTCCGTCTTATCCACTCAACAAATCAGCCTCATAAGTTCTCAAAAACCGAACTCACTAGAACAGTTAGAGAAGATAATTGGAAAACTGAAGACAGATAAGTATGGAGAGAGAATTCTTGTGCAAATTGAAATGTATTCTGATTTCAAGCCTCCTGATGAGAGAAATGAACAAGGCTCTGAAATTAGAGCTGCAAAGAAGTTAAAGACCAAGAAACCTATTGTGCTTGTTGACAGTAGTGATGAAGATGAAGCATGA 2121 0.4177 MEPNDLLQELLAIEVEIQDVEDQIRALIERQEQLHERKSELKAILEACEESGNPVNDGAPGAVENWSGPFEWDSEADDVRLNIFGISTYRANQREIINAIMSRRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALDKGEGDLKVLHVTPEKISKSKRFMSKLEKCHHADRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPIVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAGFIQESYPNEESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFFENTGLQNLYDIVKYCQSKKTCRRSAIFQHFAEPPQDCNGMCDNCAFPSEVKELDVSSHAKLMVSLLKDMQENDRRLTMLQLVDKMKIKQKELDFKLKKEEMKQLILQLLLERVLKEEFQHTAYTTNAYVAEGPLARQILLGKKTVKIEISSEQRTKAGVKSVKRSFGSSGLEVKLDELRKELSSMNGGILPHSVLSTQQISLISSQKPNSLEQLEKIIGKLKTDKYGERILVQIEMYSDFKPPDERNEQGSEIRAAKKLKTKKPIVLVDSSDEDEA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0310 706 Coils Coil 517 537 - -
Lele56g0310 706 Pfam RecQ zinc-binding 419 475 IPR032284 -
Lele56g0310 706 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Lele56g0310 706 SMART helicmild6 326 407 IPR001650 -
Lele56g0310 706 FunFam ATP-dependent DNA helicase 480 580 - -
Lele56g0310 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lele56g0310 706 Gene3D - 480 581 IPR036388 -
Lele56g0310 706 Pfam Helicase conserved C-terminal domain 311 406 IPR001650 -
Lele56g0310 706 FunFam ATP-dependent DNA helicase 280 476 - -
Lele56g0310 706 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 657 - -
Lele56g0310 706 FunFam ATP-dependent DNA helicase 599 669 - -
Lele56g0310 706 SMART ultradead3 85 288 IPR014001 -
Lele56g0310 706 CDD SF2_C_RecQ 280 416 - -
Lele56g0310 706 Gene3D - 54 279 IPR027417 -
Lele56g0310 706 Coils Coil 10 51 - -
Lele56g0310 706 FunFam ATP-dependent DNA helicase 54 279 - -
Lele56g0310 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Lele56g0310 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Lele56g0310 706 Pfam HRDC domain 604 661 IPR002121 GO:0003676
Lele56g0310 706 Gene3D HRDC domain 599 667 IPR044876 -
Lele56g0310 706 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Lele56g0310 706 Gene3D - 280 476 IPR027417 -
Lele56g0310 706 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 507 IPR004589 GO:0004386|GO:0006310
Lele56g0310 706 CDD DEXHc_RecQ1 71 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0310 Lele-ChrLele56 2361198 2369956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0310 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 1.05e-06 49.7