LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g0293	ATGAATAGCATCAACGACGACAGTTCCAGACAAGATCTCGACCCTCAAAGTGACCACAGTTCTGACTATTTAGCTCACTCCCTTCCTCTCCAGCCTCAGCCCCAGCCTCGCCGCCCTCGTGGCTTTGCAGCCACGTCGGCGGCAGCTACCACCTCCCCCAATTCTACTGGAAAAGGTAAGAAAGAGAGAGAGAAAGAGAAGGAGCGCACCAAGCTCCGAGAGCGTCACCGTCGAGCAATCACTAGCCGTATGCTCGCCGGCCTCCGTCAGTATGGTAATTTCCCTCTCCCGGCTCGTGCGGACATGAATGATGTGCTTGCCGCGCTCGCCCGCGAGGCTGGTTGGGTCGTTGAGGCAGATGGCACCACCTACCGTCAGTGCCCACCTCCTTCGCAAATGGCATCATTTGCTGCAAGGTCAGTTGAAACCCCGCTCTCTGCAGGTTCTTTAAGAGCTTGCGCTGCTAAAGAAACACTAGAGAATCAGCCACCAGTACTTAGAATTGATGAAAGCTTGTCACCTGCATCCATAGATTCTGTTGTAATTGCAGAGAGGGATTCAAAGAATGAGAAATATCCAAGTGCAAGCCCTATCAATCCAGTCGACAGCTTGGAGGCTGACCAGCTTATGCAGGATATTCATTCTGGGGCGCATGAGAATGACTTCACGGGCACACCTCGTGTTCCTGTTTATGTAAAACTTCCAGCTGGTATTATTAACAAATTTTGTCAGTTGATTGATCCTGAAGGAATTAGACAGGAGCTAATTCACATGAAGTCTTTAAATTTTGATGGTGTCCTTGTGGATTGTTGGTGGGGCATTGTGGAAGGCTGGAGCCCACAGAAATATGTGTGGTCTGGCTATAGGGTACTTTTTGACATTGTTAGAGAAATGAAGTTGAAGTTACAGGTCGTTATGGCTTTTCATGAATATGGAGGGAATGATTGTAGTGATCCATTGATTGCCCTCCCACAATGGATTTTGGAGATTGGAAAAGTCAACCAGGATATTTTTTTCACAGATCGTGAAGGACGGAGGAATACTGAATGTCTTTCTTGGGGTATTGACAAAGAGAGAGTTCTGAACGGAAGAACTGGAATCGAGGTCTATTTTGATTTCATGAGAAGCTTTCGGGCTGAGTTTAATGACTTGTTTGCGGAAGGCGTCATTTCTGCTATAGAAATTGGACTTGGGGCCTCTGGGGAGCTGAAATATCCTTCTTTTTCGGCAAGGATGGGATGGAGGTACCCTGGTATTGGTGAGTTTCAGTGTTATGATAAATATCTGCTACAAAGCCTACGAAGAGCAGCCAAATCACGTGGCCACTCTTTTTGGGCTAGAGGGCCTGATAATGCTGGACAATACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAACGGGGTGATTATGACAATTATTATGGGCGCTTCTTCTTGCATTGGTATGCCCAGTCATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAAGCCTGGCTTTTGAGGAAACAAAATTAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTACTAGTCATGCCGCAGAGTTGACAGCAGGATATCACAACCCTACAAACCAGGATGGATACTCTCCTGTTTTTGAGGTTCTGAAAAAACATGGTGTGACCATGAAGTTTGTCTGCTTAGGATTTCAGCTTTCTAGTCAGGAAGTGGACGAGTCATTGTCGGACCCAGAGGGCTTGACTTGGCAGGTATTGAACTCGTCCTGGGATCGAGGGTTGATTGTAGCTGGAGAGAATGCAATACCATGTTATAATAGAGAAGGATTCAAGAGTCTAGTTGATATAGCGAAGCCAAGAAATGATCCTGATCGCCACCACTTTTCATTTTTTGCATATCAACAACCTTCCATGGTTCAGGGTAATATTTGCTTACCAGAGTTGGATCACTTCATCAAATGCATGCATGGTGAGATTACGGGGAATCTGTAA	1983	0.4589	MNSINDDSSRQDLDPQSDHSSDYLAHSLPLQPQPQPRRPRGFAATSAAATTSPNSTGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQCPPPSQMASFAARSVETPLSAGSLRACAAKETLENQPPVLRIDESLSPASIDSVVIAERDSKNEKYPSASPINPVDSLEADQLMQDIHSGAHENDFTGTPRVPVYVKLPAGIINKFCQLIDPEGIRQELIHMKSLNFDGVLVDCWWGIVEGWSPQKYVWSGYRVLFDIVREMKLKLQVVMAFHEYGGNDCSDPLIALPQWILEIGKVNQDIFFTDREGRRNTECLSWGIDKERVLNGRTGIEVYFDFMRSFRAEFNDLFAEGVISAIEIGLGASGELKYPSFSARMGWRYPGIGEFQCYDKYLLQSLRRAAKSRGHSFWARGPDNAGQYNSMPHETGFFCERGDYDNYYGRFFLHWYAQSLIDHADNVLSLASLAFEETKLIVKVPAVYWWYKTTSHAAELTAGYHNPTNQDGYSPVFEVLKKHGVTMKFVCLGFQLSSQEVDESLSDPEGLTWQVLNSSWDRGLIVAGENAIPCYNREGFKSLVDIAKPRNDPDRHHFSFFAYQQPSMVQGNICLPELDHFIKCMHGEITGNL	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g0293	660	MobiDBLite	consensus disorder prediction	57	75	-	-
	Lele56g0293	660	Gene3D	Glycosidases	218	659	-	-
	Lele56g0293	660	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	164	654	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	SUPERFAMILY	(Trans)glycosidases	222	656	IPR017853	-
	Lele56g0293	660	MobiDBLite	consensus disorder prediction	1	75	-	-
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	283	301	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	578	600	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	305	326	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	471	490	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	398	420	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	262	276	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	540	563	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	505	521	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	522	533	IPR001554	GO:0000272\|GO:0016161
	Lele56g0293	660	Pfam	BES1/BZR1 plant transcription factor, N-terminal	57	202	IPR008540	-
	Lele56g0293	660	Pfam	Glycosyl hydrolase family 14	246	631	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g0293	Lele-ChrLele56	2274623	2279731	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g0293	33	656	Glycoside Hydrolase	AT5G45300	66.923	0.0	880

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Lele56g0293		Glyco_hydro_14	2.5e-84	CL0058