Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0264 ATGCCGAAATTCACTTACATTGATAGCAATTCCGAGAAGTGGTTGGCCACGTCGGAGTGCGCAATTTGCTTGGCTGAGTTTGCCGGAGCCGACGAGATCCGAGTTCTTCCACAGTGCGGCCATGGCTTCCACGCGGCGTGCATAGACACGTGGCTTGGGTCACACTCTTCGTGCCCTTCCTGTCGGCAGATTCTTGCTCTGCCTCCGAGGTGCCGTAGGTGCGGCCTTTACCCGGCGGTTCGCAGCGGAGAAGCCACCAGAATTAGTGGTGGTGAACCGGGGCTCAAGTCCCGACATGACGATAATGCCACTACTGCTATTAATGATTATGTTAATAGTTCAACTAGCGATCATCAAGGCCCCAGAAATAATACTGGATTCCTTCCATAA 390 0.5308 MPKFTYIDSNSEKWLATSECAICLAEFAGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILALPPRCRRCGLYPAVRSGEATRISGGEPGLKSRHDDNATTAINDYVNSSTSDHQGPRNNTGFLP 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0264 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 75 - -
Lele56g0264 129 MobiDBLite consensus disorder prediction 85 129 - -
Lele56g0264 129 ProSiteProfiles Zinc finger RING-type profile. 20 62 IPR001841 -
Lele56g0264 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 65 IPR013083 -
Lele56g0264 129 SMART ring_2 20 61 IPR001841 -
Lele56g0264 129 MobiDBLite consensus disorder prediction 104 129 - -
Lele56g0264 129 Pfam Ring finger domain 19 62 IPR001841 -
Lele56g0264 129 SUPERFAMILY RING/U-box 11 75 - -
Lele56g0264 129 CDD RING-H2_PA-TM-RING 19 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0264 Lele-ChrLele56 2065380 2065769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0264 1 101 C3H Transcription Factor Family AT1G20823 56.311 2.56e-30 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0014 52 113979 117842 Lele56g0264 56 2065380 2065769 CCT
Lele54g1178 54 17469636 17470298 Lele56g0264 56 2065380 2065769 hybridization