Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0247 ATGGTAGCTGGCGCACAGCAGCAGCAGCCACATCATCAACAACCTCAACCTCAATCGCAGCAACAGACTCAGCGAACTACAACCTCTGCGCAAGATGAGGCCTTAAAGAGGACCACGGATTGCGTCTACTTTCTTGCTTCCCCGTTGACATGCAAAAAGGGAAGTGAATGTGACTATCGCCATAGCGAGTATGCTCGGGTTAATCCCCGAGATTGTTGGTATTGGTTGAACGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATAGCTTCTTATCACCACAGGCAGCCACTGCTGGTGGATCATCTGCACCCCCATCACAGAGTGCACCGACTTCTGTACCACATGCACCTTATAATTCTACAAAGCCAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGAACGATGTGCTTTTTTGCATGGACCAAATCCTAGCACCAGTAATAAAGTTCCTCAGGTTCAGGCCACTAACCAGGTTACTGATCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAGTCAACACAAGAAAGGAAGATTTCCCAAGCAAATGTTGCAAAGCCAGTTGCAGGCACTGAAGCTAAGCCTGCCCGAAATGTTGAAACTGCTTCACATAGAAATGTAGTTGCCTTAGAGAGGCATGCACTGCCAGCAATGGGATTTGATAATGAGGCGTCTAGATTCAAGGTAGTAAATACTCTGCCTGTGGCAAATGGAACCGCCATTGCCAGGCCAAGCCATGCATATCAGTCTCATGTATCAGATGATCATAGTTTCCACAATGGCAAGGAAAGCGATGAATTCTTGAGAGAATCCTCACCTGGCTTTGATGTACTTGTAGCTGATGAACTGAGGAATTCAGATTACTATGATAGAGAGGACCAATTTGGAAAACCTAGAGGCCAAGATGGGATGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCAGATATTGACCAAGAAAGATATTGCGGGCCACAAGTTTATGACTCGTACGATCACATGCAAGAGACATATGAATGGGATCAGCGCAGGAATTCATCTGAAAGAATATTCCGGGGAACAACCCATTTGGAAAGGCTGACTCATCGCAGATCTGGCAGTCCTGAAAATGTTGGGGTTTCAGATCTTCGACATCGTTTATCTAAGCGCAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATGCGCGTCAGAGCCATGATGATGAGCAAAGTCACCAATTTTCTTCTCAAAAGGATGCTCACCAGTTACCTCTGACTGAAAGCGCTCTCAGTAATCGCTTCCGAGGCAGGATAAAGCTTCCCGCAAATGGTGGTGACGAATATGTGGAGAGGGAATCAGACAGGGGAAGAAATAGAAGCACATTGTCGCCTGTAGCTATGCAGGCTCCTCACCCAGGTAGGTTCCGAGATAGATTGAGAGGAAAGGTGCAAGAAGATTTTGAGACGAAAAACTTCAGGGATCAACCTATGAGGAGAGAAATAAACGGGGACCAAGATGCTGATTTTGATGGACCAAAAAGTCTCGCTGAACTGCGAAATGGAAAGAATAAGGAGCATCATTCTCTTGGTAAGAGGAAAAGCTTAAAGGAACAACAACAATCTGAGGATGATTTCATGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGAAGAAGAGAGCGGTTGGAGTGGAAGTAGGTTCCAAGAGTGGCAAGTCGTCTGAGAATAAAGGAGACAATAAAGACAGAGAAATTACTAATGGCTCGGAATACACCTCTGTCACAGATGCGCAAAATGGCACTTTGCCTCCAAATAAGGAAGATGTTAAGAACCAGGAATCCGAGAACACGGTTGAAAGAGATGCAGACAAGACTGATGATGTAACTCATGATCGATCATTTGAAGAAGGAATGATGGACAACGAAGTAATAGAAGAGCAGGAGTATGAAGGTGATGATAAGAAGGATGGTGATTATTACTATGAGCAAGGTGACGAGGGAGACTACAATTATGATGAAGGTGAAAATCCAGAGCAGGAAGAATACATGGATGATGAGGAGGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTCACATGA 2157 0.4446 MVAGAQQQQPHHQQPQPQSQQQTQRTTTSAQDEALKRTTDCVYFLASPLTCKKGSECDYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLSPQAATAGGSSAPPSQSAPTSVPHAPYNSTKPAVPCIFFQKGLCLKGERCAFLHGPNPSTSNKVPQVQATNQVTDPPSFKKVFSGPESTQERKISQANVAKPVAGTEAKPARNVETASHRNVVALERHALPAMGFDNEASRFKVVNTLPVANGTAIARPSHAYQSHVSDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDREDQFGKPRGQDGMNLDSVNEYDLGHSVDYKSVADIDQERYCGPQVYDSYDHMQETYEWDQRRNSSERIFRGTTHLERLTHRRSGSPENVGVSDLRHRLSKRRRVNGLKSVVSHDYARQSHDDEQSHQFSSQKDAHQLPLTESALSNRFRGRIKLPANGGDEYVERESDRGRNRSTLSPVAMQAPHPGRFRDRLRGKVQEDFETKNFRDQPMRREINGDQDADFDGPKSLAELRNGKNKEHHSLGKRKSLKEQQQSEDDFMFEGPKPLSEILKKKRAVGVEVGSKSGKSSENKGDNKDREITNGSEYTSVTDAQNGTLPPNKEDVKNQESENTVERDADKTDDVTHDRSFEEGMMDNEVIEEQEYEGDDKKDGDYYYEQGDEGDYNYDEGENPEQEEYMDDEEDGDDFAKKIGVMLT 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0247 718 MobiDBLite consensus disorder prediction 169 210 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 416 431 - -
Lele56g0247 718 ProSiteProfiles Zinc finger C3H1-type profile. 126 153 IPR000571 GO:0046872
Lele56g0247 718 Pfam RNA-binding, Nab2-type zinc finger 131 151 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 1 32 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 604 624 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 665 679 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 99 122 - -
Lele56g0247 718 FunFam Zinc finger CCCH domain-containing protein 17 29 92 - -
Lele56g0247 718 ProSiteProfiles Zinc finger C3H1-type profile. 35 64 IPR000571 GO:0046872
Lele56g0247 718 MobiDBLite consensus disorder prediction 680 705 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 625 656 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 382 707 - -
Lele56g0247 718 Pfam Zinc-finger containing family 36 92 IPR041686 -
Lele56g0247 718 Gene3D - 120 176 - -
Lele56g0247 718 Gene3D - 23 93 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 589 603 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 98 122 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 460 474 - -
Lele56g0247 718 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 32 716 - -
Lele56g0247 718 MobiDBLite consensus disorder prediction 489 560 - -
Lele56g0247 718 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
Lele56g0247 718 SMART c3hfinal6 35 63 IPR000571 GO:0046872
Lele56g0247 718 SMART c3hfinal6 68 91 IPR000571 GO:0046872
Lele56g0247 718 SMART c3hfinal6 127 152 IPR000571 GO:0046872
Lele56g0247 718 MobiDBLite consensus disorder prediction 169 192 - -
Lele56g0247 718 SUPERFAMILY CCCH zinc finger 127 151 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0247 Lele-ChrLele56 1951133 1954487 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele56g0247 zf-CCCH_3 4.1e-11 CL0537