Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0239 ATGTCTTGCTCGTCGTCATCAGGGTCCGAGGAAGAGGATGAGGGCTTCGATTCCTACAGAAAGGGAGGCTACCACGCCGTGAGGGTTGGCGATCAGTTCGCCAGTGGGAGGTACATAGCACAGAGGAAGCTGGGGTGGGGTCAGTTCTCCACCGTCTGGCTCGCTTACGATACTCGCAATTCTACATATGTTGCTCTCAAAATCCAGAAAAGTGCAGCCCAGTTTGCTGAGGCCGCCCTTCATGAGATAAATGTTCTTTCATCCATTGCTGAGGGCAACCCTTCAAATTCAAAGTGTGTCGTTCAATTGATTGACCACTTCAAGCATTCAGGCCCCAATGGGCAGCACCATTGCATGGCCCTTGAGTTCCTTGGCGATAGCTTGCTTCGTCTGATCAGATATAGACGTTACAAAGGCCTTCCAATGAATAAAGTTAGAGAAATTTGTAAATGCATTTTGATTGGTTTGGATTACTTGCATGGAGAACTTGGTATCATCCACTCGGACCTAAAACCTGAAAATGTCCTTCTCTTGTCTACCATTGATCCTGCCAAAGACCCTGTTAGATCTGGACAAAGCCCAATTCTGGAGAGGCCTGAGGGAAGCTTCAATATTGGATTTTCAAGTGTTATTGAGAAAAAGTTGAAAAGGAGAGCGAGAAGAGCAGTAGCTAAAATATCAGGTAGAACTTCGTCATTGGGAGAAGCTGGAGAGGCTACAAAATCTGATAGAAACATCAATGGAATTGATGTGCAATGCAAGATAGTAGATTTTGGAAATGCATGCTGGGCAGATAAGCCATTTGCAGAAGAAATCCAGACGAGGCAGTATAGAGCTCCTGAAGTTATACTGCAGTCTGGGTATTCGTTCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTGGCCACAGGTGATATGATGTTTACTCCCAAACCAGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATACCCCGGAAGGTTGCCGTCAGTGGAGCAAAATCCAAGGATTACTTTGATAGACATGGGGATCTAAAAAGAATTAGGAGGCTAAAATTCTGGCCACTTGACAAATTTTTTATTGATAAGTACAAATTTTCAGAGAGAGATGCTCGTGAGTTTTCAGAATTCATTTCCCCACTTCTGGATTTTTCGCCGGAGAAGCGGCCGACTGCACAAAAATGTTTAGAGCACCCATGGTTTAATGGCCAAGCCAACTCCAAATAA 1263 0.4489 MSCSSSSGSEEEDEGFDSYRKGGYHAVRVGDQFASGRYIAQRKLGWGQFSTVWLAYDTRNSTYVALKIQKSAAQFAEAALHEINVLSSIAEGNPSNSKCVVQLIDHFKHSGPNGQHHCMALEFLGDSLLRLIRYRRYKGLPMNKVREICKCILIGLDYLHGELGIIHSDLKPENVLLLSTIDPAKDPVRSGQSPILERPEGSFNIGFSSVIEKKLKRRARRAVAKISGRTSSLGEAGEATKSDRNINGIDVQCKIVDFGNACWADKPFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMMFTPKPGQGFSEDEDHLALMMELLGKIPRKVAVSGAKSKDYFDRHGDLKRIRRLKFWPLDKFFIDKYKFSERDAREFSEFISPLLDFSPEKRPTAQKCLEHPWFNGQANSK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0239 420 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0239 420 FunFam Protein kinase superfamily protein 24 123 - -
Lele56g0239 420 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0239 420 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lele56g0239 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lele56g0239 420 FunFam Serine/threonine-protein kinase SRPK 115 413 - -
Lele56g0239 420 CDD STKc_SRPK 27 413 - -
Lele56g0239 420 Pfam Protein kinase domain 251 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0239 420 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g0239 420 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Lele56g0239 420 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lele56g0239 420 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lele56g0239 420 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0239 Lele-ChrLele56 1906355 1908708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0239 4 414 EF-hand Containing Proteins AT5G22840 51.627 3.04e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele56g0239 Pkinase 2.9e-23 CL0016