Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0233 ATGCCTAAAGCGAATAAGACCGACTCCATAGTCGACGATGACCGGTTGAAGCGCAAGGGCGCTGGAGTTGGAAGGAAGCGGTCCAGAAAAGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTCAGAGAGCAGTATAAGAAGGAACATCCAGACAATAAATCAGTCACTGTTGTCGGTAAAGCTGGCGGTAATGAATGGAAAGCCATGTCTGATGCTGAAAAAGCTCCCTACGTTGCCAAGGCAGAGAAGAAGAAAGCTGAATACGAGAAAACTATTAAAGCGTACAATATGAGATTGGCTGAGGGCAAAAATCCTTCAAAGGAAGCCGAGTCTGATAAATCAAAGTCAGAAGTCAATGACGATGATAACGAAGAGGAGGTCAAAAATATATTTTTTGAATTTCTTTGTTTGAGAATGGCCAAATTTCCAGTCAGCCATACCAATTATACTTACGTGCATGACCAGAATGATCCTTCTGAAGCAATTGACGTACACCATATAATGGTGAAAAGGAGTGGCGCAAAAGCTGTCTTTGTTTACATCTCAACACTTGTTCTATTATCACCTGCCTTCTATCTCTACGCGTATGAGGGGAAGTCGATTACCCTTGTCTATTACAGCTTGCTTTTCAACTTAATATTTGTCAAGATCTTACTTTGGAGGTCTGTTGCGAAAGAGTCTGTTGTGATAATGCCAGCTTTTGGAGTACAGCTTGAGACTCACTACATGAGCGGAAAAGTCACCCGCTACTTTGTTCCCATTGACAAGATTCTGAAACCTGTTTTACTAGAATGTGTGACACCAATGACATGTTACTGGACTCTATCCTTGATTGTACGCGGGGAATCAGAACTAATGTTGATTTTTAAGAACTTGCGTCCTCCAGTGAAAATGTTGGTCCATGTCTGGAAGGCCTTGTGTGCTGGAACTGATAGCAAAAGAGGCTTGGACAAAGGCACTGTTGAGAATTAA 1005 0.4249 MPKANKTDSIVDDDRLKRKGAGVGRKRSRKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPDNKSVTVVGKAGGNEWKAMSDAEKAPYVAKAEKKKAEYEKTIKAYNMRLAEGKNPSKEAESDKSKSEVNDDDNEEEVKNIFFEFLCLRMAKFPVSHTNYTYVHDQNDPSEAIDVHHIMVKRSGAKAVFVYISTLVLLSPAFYLYAYEGKSITLVYYSLLFNLIFVKILLWRSVAKESVVIMPAFGVQLETHYMSGKVTRYFVPIDKILKPVLLECVTPMTCYWTLSLIVRGESELMLIFKNLRPPVKMLVHVWKALCAGTDSKRGLDKGTVEN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0233 334 MobiDBLite consensus disorder prediction 110 132 - -
Lele56g0233 334 SUPERFAMILY HMG-box 25 109 IPR036910 -
Lele56g0233 334 Gene3D High mobility group box domain 23 137 IPR036910 -
Lele56g0233 334 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Lele56g0233 334 Pfam GPI-GlcNAc transferase complex, PIG-H component 238 301 IPR019328 -
Lele56g0233 334 MobiDBLite consensus disorder prediction 1 20 - -
Lele56g0233 334 CDD HMGB-UBF_HMG-box 38 104 - -
Lele56g0233 334 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Lele56g0233 334 MobiDBLite consensus disorder prediction 114 132 - -
Lele56g0233 334 MobiDBLite consensus disorder prediction 1 43 - -
Lele56g0233 334 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H 155 324 IPR044215 GO:0000506|GO:0006506
Lele56g0233 334 SMART hmgende2 37 108 IPR009071 -
Lele56g0233 334 Coils Coil 89 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0233 Lele-ChrLele56 1874633 1879345 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele56g0233 HMG_box 1.1e-22 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g0233 56 1874633 1879345 Lele56g0233 56 1874633 1879345 ECH
Lele55g0246 55 1503020 1507771 Lele56g0233 56 1874633 1879345 ECH
Lele53g1240 53 21040565 21046278 Lele56g0233 56 1874633 1879345 hybridization
Lele54g1212 54 17664763 17669620 Lele56g0233 56 1874633 1879345 hybridization