LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g0230	ATGGGTCTCTGCTTCGGTTCTCTCGCTCCCCGTGGTCTCAAGATTGGCTCCAAAAGACCTCACAATTCAGGATCGGCGAGTCCTGTGAGTAGGAATGTGGAGTCATTTACAACAAACAGCACTGTCTATAAGAGCCAATTCTCGATGATTGCAAATGGAAGCGTCGATGAGTCCAATGCTTCTCCTAGTCGGCATGTTATAGTAACGCCGAATTACTTGAAGGTTTTCAGTTTTGGGGATTTGAAAGCAGCCACCAAGAACTTTAAATCGGATTCATTGCTTGGAGAGGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGACGCTTTCGCCGACCAAAGCTGGCTCTGGAATTATGGTCGCTATAAAGAAACTCAACCCTGAGAGTATGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTGAACTTCTTAGGAAGCCTTTCTCACCCAAACCTGGTCAAGCTATTTGGTTACTGCTGGGAGGATGATGAACTTCTCCTTGTATATGAGTTCATGCCTAAGGGAAGCTTGGAGAGTCATCTCTTCAGAAGGGGTTCTAACTCAGAACCGCTTTCTTGGAACACACGACTCAAAATAGCTATTGATGCAGCTCAAGGCCTAGCTTTCTTGCACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAGGCCTCAAATATATTACTTGATGGGAGTTACATTGCAAAAATTTCTGATTTTGGCCTAGCTAAATTAGGGCCTACTGGAGAACAATCACATGTGACCACCAGGATCATGGGCACATATGGTTATGCTGCCCCAGAATACGTAGCAACAGGGCACTTGTATGTGAAGAGTGACGTGTACGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGTTTGAAAGCACTCGATCCAAAGAGGCCATCTGGGCAGCAAAATCTGACTGAGTGGGGAAAGCCATGTCTCACCAGCAAAAAGAAGTTGAAAACCATAATGGATACCAGAATAGAGGGTCAATATTCACTCAGTGCAGCATTTGAAGCAGCTCAGCTTATTCTCAAGTGCCTAGAATCTGACCCCAAAAAACGCCCCGGTATGAAGGATGTAGTGGAGTCATTGCAAGGTATTGAAGCTACCCAAAACAAGTCAAAAGGTTCCAAGAAATCATGCCAATCTTCACCTCTTCATCATCATAAGAAGCCTATTCATCACCGATCAGTTCATGAAGGCCATAAAATCTGTAACATACGTAGAATTAAACCGAGTCAAAATCGGCAACTTATTTGTCGTGGCTTGTTGAAATTGATGCAAACCAACAGGGACAGAGCACAAGAAAAGGCCATGGCTCTCTCTTCATCCAACTCTCTTCATCTCCTTCTTCTTGTTCCTCTCTTGCTTCTTACCCTAACTCCGTCAAAGGTCACCTCCAGTTCTCACCACCACCACCACCACCGCTACCGCGACCTCAAATCGCTCCATTTCTCTCTCTTCCAACATGAAACCATAAACAAAACAGGTTACATCATAGTGGAAGGTATTACAGGAGGACCAGGAGTGACTCAGACGACAACTCCATTTGGGACCTATTTCGTGTTTCAGGACACTTTGACAGAGACAGCCAACATGTCGTCCAAGGTTGTCGGAACAGCAGAAGGAACCTCCATAACGTCGAGCTTCGATGGGCTCCAGAGCATCTCAATCGCAAAGTTGACACTGAAGTTGAAGAACCATAAGGGGTCAGTTTCAGTGGTGGGCGTGACCAACAACGTCAAGCACTCTAATCTTCCAGTGGTGGGAGGTACTGAGGATTTCTTGTTCGTACAAGGTTACGTTACTTCTTCCCCAGTTGATCTTAAGGGCCAAACTGTTGTCTACAAGATTGAGTTTCATCTCTATTGGCCTCCTTATGCTTATTGA	1908	0.4502	MGLCFGSLAPRGLKIGSKRPHNSGSASPVSRNVESFTTNSTVYKSQFSMIANGSVDESNASPSRHVIVTPNYLKVFSFGDLKAATKNFKSDSLLGEGGFGKVYKGWLDEKTLSPTKAGSGIMVAIKKLNPESMQGFQEWQSEVNFLGSLSHPNLVKLFGYCWEDDELLLVYEFMPKGSLESHLFRRGSNSEPLSWNTRLKIAIDAAQGLAFLHTSEKQIIYRDFKASNILLDGSYIAKISDFGLAKLGPTGEQSHVTTRIMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLKALDPKRPSGQQNLTEWGKPCLTSKKKLKTIMDTRIEGQYSLSAAFEAAQLILKCLESDPKKRPGMKDVVESLQGIEATQNKSKGSKKSCQSSPLHHHKKPIHHRSVHEGHKICNIRRIKPSQNRQLICRGLLKLMQTNRDRAQEKAMALSSSNSLHLLLLVPLLLLTLTPSKVTSSSHHHHHHRYRDLKSLHFSLFQHETINKTGYIIVEGITGGPGVTQTTTPFGTYFVFQDTLTETANMSSKVVGTAEGTSITSSFDGLQSISIAKLTLKLKNHKGSVSVVGVTNNVKHSNLPVVGGTEDFLFVQGYVTSSPVDLKGQTVVYKIEFHLYWPPYAY	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g0230	635	Pfam	Protein tyrosine and serine/threonine kinase	91	370	IPR001245	GO:0004672\|GO:0006468
	Lele56g0230	635	Gene3D	Transferase(Phosphotransferase) domain 1	174	405	-	-
	Lele56g0230	635	Pfam	Dirigent-like protein	490	627	IPR004265	-
	Lele56g0230	635	FunFam	Serine/threonine-protein kinase PBS1	174	389	-	-
	Lele56g0230	635	MobiDBLite	consensus disorder prediction	374	405	-	-
	Lele56g0230	635	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Lele56g0230	635	SUPERFAMILY	Protein kinase-like (PK-like)	62	370	IPR011009	-
	Lele56g0230	635	ProSitePatterns	Protein kinases ATP-binding region signature.	94	127	IPR017441	GO:0005524
	Lele56g0230	635	Gene3D	-	472	629	IPR044859	-
	Lele56g0230	635	Gene3D	Phosphorylase Kinase; domain 1	72	173	-	-
	Lele56g0230	635	CDD	STKc_IRAK	94	373	-	-
	Lele56g0230	635	PANTHER	OS01G0588500 PROTEIN-RELATED	57	374	-	-
	Lele56g0230	635	ProSiteProfiles	Protein kinase domain profile.	88	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele56g0230	635	FunFam	Serine/threonine-protein kinase BIK1	53	173	-	-
	Lele56g0230	635	MobiDBLite	consensus disorder prediction	388	404	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g0230	Lele-ChrLele56	1854367	1860899	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g0230	54	370	Glycoside Hydrolase	AT3G07070	47.649	1.27e-95	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele56g0230		PK_Tyr_Ser-Thr	4e-49	CL0016