Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele56g0227 | ATGCAAAACGCTGACAAAGATTGTAGAACCAGCACTAAATCTGATCCTCCCTCTCACCATGATCAACCCCCTCCTCCTCCTCCTCCTCCTACTAGTCCCACTCAAACTGTCGGCGGTGATGTCACCGCCACTGAAGAAGGAGGAAGTGGCGCGGGAGGTGTCGCCAGCTCCGACGTGAGGATAGTCCAGGTGGTGGACCCTACTCCTCCACCAGCTGGGGGTGAAGGTGGGTCCTCTGCGGCGGCGGTGAGGGTGGAGGGTGGAGTGGTGGTGATGGAAGGTGGGTCGTCGGTGGCTCCAACGCCGCCGGAGAAACAGGGTAAGCAGAAGCGGAAGTCGGCTCAACTTTCAGATCCTCCACCTTGGCCACCGAAGTGCAACGAGTGCGGGAAAGAGTTCCCCAGTTGGAAAGCTGCGTTTGGACATATGAGGGCACACCCTGACCGCGAATATCGAGGTTTCTTCAAACCTCCTACTTCTTCTTCTTCATCCTCACCGAGGCAACGCGTTCGTCTAGGTGTGAATATAAATACAGGTGTGGAACAAGGTGGAGGGGAGAAGGGAATATCATCGGCTACCGTAGGAGTTGGGCTTGATCTGAATCAGCCGACGATGGAGGAAATGGAGTCTTCTAATTCTGAGGCTGCACAGAGAAACGAAGCACTCGACTCTTCTTCTTCTGCTGCAGAAAAGAAGGTCGGGTTTGACCTAAACGAACCTCCTCCTTCCGAAGATGATAATGATCAACACAAGCCCTAA | 759 | 0.5428 | MQNADKDCRTSTKSDPPSHHDQPPPPPPPPTSPTQTVGGDVTATEEGGSGAGGVASSDVRIVQVVDPTPPPAGGEGGSSAAAVRVEGGVVVMEGGSSVAPTPPEKQGKQKRKSAQLSDPPPWPPKCNECGKEFPSWKAAFGHMRAHPDREYRGFFKPPTSSSSSSPRQRVRLGVNINTGVEQGGGEKGISSATVGVGLDLNQPTMEEMESSNSEAAQRNEALDSSSSAAEKKVGFDLNEPPPSEDDNDQHKP | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele56g0227 | 252 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 14 | 163 | - | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 156 | 172 | - | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 237 | 252 | - | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 1 | 126 | - | - | |
| Lele56g0227 | 252 | Coils | Coil | 205 | 225 | - | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 204 | 226 | - | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Lele56g0227 | 252 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 126 | 146 | IPR013087 | - | |
| Lele56g0227 | 252 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 124 | 151 | IPR013087 | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
| Lele56g0227 | 252 | Pfam | C2H2-type zinc finger | 125 | 148 | - | - | |
| Lele56g0227 | 252 | MobiDBLite | consensus disorder prediction | 149 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele56g0227 | Lele-ChrLele56 | 1836607 | 1837589 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele56g0227 | 126 | 170 | C2H2 Transcription Factor Family | AT4G35280 | 48.000 | 1.00e-10 | 58.9 |
Transcription factors information