Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele56g0225 | ATGGTATGTGACGATGCCGTTGATGATGCGACGGAATCGAAGGGCACTGACGAAGTGAACGTCAACATTCGTTGCTCCAATGGCTCTAAGTTCTTGGTTCAGATTAGTCTTGACTCCACCATCAAATCATTCAAGGAAGCTATCGCTCAGAAGTGCGAGATCTCATCCGATCAACAGCGGCTGATTCATAAGGGTCGGATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGAGGATGATCACATTGTTCATTTGGTTCGTGGATATGCACCTGCTGCTACAACCAATACCACTGGTATGACCAATGGCACAACAAATAGTGCAAGAATTGGCATGAATGGCTTGTTTGAATCAGGCCTCTCTAACCTCGAACAAATGCAACAACCATTTATTTTAAATCCCAATTTGATGAGAGACCTAATGAACACACCTCTGATAAATAATCCTGACACAGTGCGGAATCTTATAATGAGTAACCCACAGATGCGAGAGATCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAGCACTCTTCGCCAGACTCTTGAAGCTGCAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAAGGATTTAACATGCTGAGGCGCATGTACGAAAATATTCAGGAACCATTCTTAAATGCCACTATGATGGCAAGATCTGGAAATGACGGCTCTAACCTGTTTGCGTCGCTATCTGGAACTCAAGGTGGCCAAGCCAGCAATCGATCAACTAATTCCTCAAGTACTAGTACTGAAACAATTGCTGGTTGCCCCTCTCCCAATACTAGTCCACTTCCTAATCCTTGGACCTCTACTAGAGCTGGAGGTACCCAAAATAACACCGCTAGGTCAACTAGTGGAGGGAATGCTCAGGCACCCCCTGGCTTTGGACTTGATCTGCCAGACCCTGCAAGTTTGGCGGGTACTACACTGGATCCCACTTTGTTCACCCAGTTAATGCAGAACCCAAATATTTCGCAAATGATGCAAAGGATCCTTTCCAACCCGCAGGCTGTGAATCAGATCCTTGGTGTCAATGCAGAGCAGCATGGCATGCCTGATTTAACCTCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCCTTCGCTTTGTGTCTTCACCAGAGACATTTCAGCATCTGTTGACTTTTCAGCGAGGGCGTTTGTCTCAGCGTGGTCAGGAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGTACCGGGGTGCAAGACACACTGAATTCTTCAGGGGGAATAAACAGCGCGTGGTTGGAGATGTTGTCAAATATGATTAGTGCACTTGGAATTGGAACTGGTAGCCAAGCTGCTCCAAACAGATCTGATGAGCCACCAGAGCAATTGTATACTAGCCAGCTTTTGCAGCTTCAAGAAATGGGTTTCTTGGATACGCAAGAAAACATAAGGGCCCTTACTTCCACATCAGGCAATGTTCATGCCGCAATTGAACGGCTTCTGGGGAACTCAGGTCAGTAG | 1560 | 0.4603 | MVCDDAVDDATESKGTDEVNVNIRCSNGSKFLVQISLDSTIKSFKEAIAQKCEISSDQQRLIHKGRILKDDQTLQSYGLEDDHIVHLVRGYAPAATTNTTGMTNGTTNSARIGMNGLFESGLSNLEQMQQPFILNPNLMRDLMNTPLINNPDTVRNLIMSNPQMREIMDRNPELAHILNDPSTLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATMMARSGNDGSNLFASLSGTQGGQASNRSTNSSSTSTETIAGCPSPNTSPLPNPWTSTRAGGTQNNTARSTSGGNAQAPPGFGLDLPDPASLAGTTLDPTLFTQLMQNPNISQMMQRILSNPQAVNQILGVNAEQHGMPDLTSHLRQMMQNPEFLRFVSSPETFQHLLTFQRGRLSQRGQEQSTQESGQTGRGTGVQDTLNSSGGINSAWLEMLSNMISALGIGTGSQAAPNRSDEPPEQLYTSQLLQLQEMGFLDTQENIRALTSTSGNVHAAIERLLGNSGQ | 519 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele56g0225 | 519 | CDD | UBA_PLICs | 477 | 515 | - | - | |
Lele56g0225 | 519 | ProSiteProfiles | Ubiquitin domain profile. | 19 | 88 | IPR000626 | GO:0005515 | |
Lele56g0225 | 519 | Gene3D | - | 459 | 519 | - | - | |
Lele56g0225 | 519 | Gene3D | - | 151 | 214 | - | - | |
Lele56g0225 | 519 | Gene3D | - | 7 | 102 | - | - | |
Lele56g0225 | 519 | Pfam | Ubiquitin family | 21 | 88 | IPR000626 | GO:0005515 | |
Lele56g0225 | 519 | PANTHER | UBIQUILIN | 16 | 514 | IPR015496 | - | |
Lele56g0225 | 519 | SMART | CBM | 373 | 402 | IPR006636 | - | |
Lele56g0225 | 519 | SMART | CBM | 333 | 371 | IPR006636 | - | |
Lele56g0225 | 519 | SMART | CBM | 161 | 200 | IPR006636 | - | |
Lele56g0225 | 519 | MobiDBLite | consensus disorder prediction | 248 | 326 | - | - | |
Lele56g0225 | 519 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 471 | 516 | IPR015940 | - | |
Lele56g0225 | 519 | FunFam | Ubiquitin domain-containing protein DSK2b | 158 | 214 | - | - | |
Lele56g0225 | 519 | FunFam | Ubiquitin family protein | 459 | 518 | - | - | |
Lele56g0225 | 519 | MobiDBLite | consensus disorder prediction | 248 | 312 | - | - | |
Lele56g0225 | 519 | SUPERFAMILY | Ubiquitin-like | 15 | 103 | IPR029071 | - | |
Lele56g0225 | 519 | SMART | uba_6 | 477 | 515 | IPR015940 | - | |
Lele56g0225 | 519 | SMART | ubq_7 | 19 | 90 | IPR000626 | GO:0005515 | |
Lele56g0225 | 519 | Pfam | UBA/TS-N domain | 477 | 513 | IPR015940 | - | |
Lele56g0225 | 519 | MobiDBLite | consensus disorder prediction | 408 | 436 | - | - | |
Lele56g0225 | 519 | SUPERFAMILY | UBA-like | 473 | 515 | IPR009060 | GO:0005515 | |
Lele56g0225 | 519 | CDD | Ubl_Dsk2p_like | 19 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele56g0225 | Lele-ChrLele56 | 1819773 | 1823218 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele56g0225 | 19 | 88 | Cytoplasmic Ribosomal Protein Gene Family | AT1G23410 | 31.429 | 5.12e-06 | 45.1 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele52g0037 | 52 | 245607 | 246899 | Lele56g0225 | 56 | 1819773 | 1823218 | CCT | |
Lele49g0029 | 49 | 200040 | 202694 | Lele56g0225 | 56 | 1819773 | 1823218 | CCT | |
Lele50g0034 | 50 | 245776 | 249798 | Lele56g0225 | 56 | 1819773 | 1823218 | CCT | |
Lele51g0031 | 51 | 214202 | 217297 | Lele56g0225 | 56 | 1819773 | 1823218 | CCT | |
Lele56g0225 | 56 | 1819773 | 1823218 | Lele56g0225 | 56 | 1819773 | 1823218 | ECH | |
Lele53g1249 | 53 | 21096988 | 21101468 | Lele56g0225 | 56 | 1819773 | 1823218 | hybridization | |
Lele54g1222 | 54 | 17727771 | 17728237 | Lele56g0225 | 56 | 1819773 | 1823218 | hybridization |