Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0225 ATGGTATGTGACGATGCCGTTGATGATGCGACGGAATCGAAGGGCACTGACGAAGTGAACGTCAACATTCGTTGCTCCAATGGCTCTAAGTTCTTGGTTCAGATTAGTCTTGACTCCACCATCAAATCATTCAAGGAAGCTATCGCTCAGAAGTGCGAGATCTCATCCGATCAACAGCGGCTGATTCATAAGGGTCGGATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGAGGATGATCACATTGTTCATTTGGTTCGTGGATATGCACCTGCTGCTACAACCAATACCACTGGTATGACCAATGGCACAACAAATAGTGCAAGAATTGGCATGAATGGCTTGTTTGAATCAGGCCTCTCTAACCTCGAACAAATGCAACAACCATTTATTTTAAATCCCAATTTGATGAGAGACCTAATGAACACACCTCTGATAAATAATCCTGACACAGTGCGGAATCTTATAATGAGTAACCCACAGATGCGAGAGATCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAGCACTCTTCGCCAGACTCTTGAAGCTGCAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAAGGATTTAACATGCTGAGGCGCATGTACGAAAATATTCAGGAACCATTCTTAAATGCCACTATGATGGCAAGATCTGGAAATGACGGCTCTAACCTGTTTGCGTCGCTATCTGGAACTCAAGGTGGCCAAGCCAGCAATCGATCAACTAATTCCTCAAGTACTAGTACTGAAACAATTGCTGGTTGCCCCTCTCCCAATACTAGTCCACTTCCTAATCCTTGGACCTCTACTAGAGCTGGAGGTACCCAAAATAACACCGCTAGGTCAACTAGTGGAGGGAATGCTCAGGCACCCCCTGGCTTTGGACTTGATCTGCCAGACCCTGCAAGTTTGGCGGGTACTACACTGGATCCCACTTTGTTCACCCAGTTAATGCAGAACCCAAATATTTCGCAAATGATGCAAAGGATCCTTTCCAACCCGCAGGCTGTGAATCAGATCCTTGGTGTCAATGCAGAGCAGCATGGCATGCCTGATTTAACCTCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCCTTCGCTTTGTGTCTTCACCAGAGACATTTCAGCATCTGTTGACTTTTCAGCGAGGGCGTTTGTCTCAGCGTGGTCAGGAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGTACCGGGGTGCAAGACACACTGAATTCTTCAGGGGGAATAAACAGCGCGTGGTTGGAGATGTTGTCAAATATGATTAGTGCACTTGGAATTGGAACTGGTAGCCAAGCTGCTCCAAACAGATCTGATGAGCCACCAGAGCAATTGTATACTAGCCAGCTTTTGCAGCTTCAAGAAATGGGTTTCTTGGATACGCAAGAAAACATAAGGGCCCTTACTTCCACATCAGGCAATGTTCATGCCGCAATTGAACGGCTTCTGGGGAACTCAGGTCAGTAG 1560 0.4603 MVCDDAVDDATESKGTDEVNVNIRCSNGSKFLVQISLDSTIKSFKEAIAQKCEISSDQQRLIHKGRILKDDQTLQSYGLEDDHIVHLVRGYAPAATTNTTGMTNGTTNSARIGMNGLFESGLSNLEQMQQPFILNPNLMRDLMNTPLINNPDTVRNLIMSNPQMREIMDRNPELAHILNDPSTLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATMMARSGNDGSNLFASLSGTQGGQASNRSTNSSSTSTETIAGCPSPNTSPLPNPWTSTRAGGTQNNTARSTSGGNAQAPPGFGLDLPDPASLAGTTLDPTLFTQLMQNPNISQMMQRILSNPQAVNQILGVNAEQHGMPDLTSHLRQMMQNPEFLRFVSSPETFQHLLTFQRGRLSQRGQEQSTQESGQTGRGTGVQDTLNSSGGINSAWLEMLSNMISALGIGTGSQAAPNRSDEPPEQLYTSQLLQLQEMGFLDTQENIRALTSTSGNVHAAIERLLGNSGQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0225 519 CDD UBA_PLICs 477 515 - -
Lele56g0225 519 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Lele56g0225 519 Gene3D - 459 519 - -
Lele56g0225 519 Gene3D - 151 214 - -
Lele56g0225 519 Gene3D - 7 102 - -
Lele56g0225 519 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Lele56g0225 519 PANTHER UBIQUILIN 16 514 IPR015496 -
Lele56g0225 519 SMART CBM 373 402 IPR006636 -
Lele56g0225 519 SMART CBM 333 371 IPR006636 -
Lele56g0225 519 SMART CBM 161 200 IPR006636 -
Lele56g0225 519 MobiDBLite consensus disorder prediction 248 326 - -
Lele56g0225 519 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 471 516 IPR015940 -
Lele56g0225 519 FunFam Ubiquitin domain-containing protein DSK2b 158 214 - -
Lele56g0225 519 FunFam Ubiquitin family protein 459 518 - -
Lele56g0225 519 MobiDBLite consensus disorder prediction 248 312 - -
Lele56g0225 519 SUPERFAMILY Ubiquitin-like 15 103 IPR029071 -
Lele56g0225 519 SMART uba_6 477 515 IPR015940 -
Lele56g0225 519 SMART ubq_7 19 90 IPR000626 GO:0005515
Lele56g0225 519 Pfam UBA/TS-N domain 477 513 IPR015940 -
Lele56g0225 519 MobiDBLite consensus disorder prediction 408 436 - -
Lele56g0225 519 SUPERFAMILY UBA-like 473 515 IPR009060 GO:0005515
Lele56g0225 519 CDD Ubl_Dsk2p_like 19 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0225 Lele-ChrLele56 1819773 1823218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0225 19 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 31.429 5.12e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0037 52 245607 246899 Lele56g0225 56 1819773 1823218 CCT
Lele49g0029 49 200040 202694 Lele56g0225 56 1819773 1823218 CCT
Lele50g0034 50 245776 249798 Lele56g0225 56 1819773 1823218 CCT
Lele51g0031 51 214202 217297 Lele56g0225 56 1819773 1823218 CCT
Lele56g0225 56 1819773 1823218 Lele56g0225 56 1819773 1823218 ECH
Lele53g1249 53 21096988 21101468 Lele56g0225 56 1819773 1823218 hybridization
Lele54g1222 54 17727771 17728237 Lele56g0225 56 1819773 1823218 hybridization